PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002119.1_g000022.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 557aa MW: 62369 Da PI: 4.5495

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002119.1_g000022.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	107.3	1.9e-33	13	157	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk........kvkaeekewyfFskrdkkya...... 69 lp+GfrF+P++eel+++yL kk +++k ++ ev i+e++++++eP+dLp+ ++ + ew+fFs+r k++ Rmu_sc0002119.1_g000022.1 13 LPKGFRFQPSEEELLSHYLVKKNHQRKDPEIEViIPEINVCDHEPRDLPAlvftrakfLPASPNMEWHFFSRRVFKHSkskseg 96 799*****************999996655665***********6567655432222556**9987777555667 PP NAM 70 ....tgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++ nratk+g Wk++g dk++++ +++++g k++L+fy pk ++tdWv+hey l Rmu_sc0002119.1_g000022.1 97 kgksKGTQINRATKEGSWKKQGDDKRITRPySDKQIGGKRILTFY---LPKKQRTDWVIHEYYL 157 66666779****************9988999******...677789******87 PP

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence
MMMMTTSSDR ITLPKGFRFQ PSEEELLSHY LVKKNHQRKD PEIEVIIPEI NVCDHEPRDL 60 PALVFTRAKF LPASPNMEWH FFSRRVFKHS KSKSEGKGKS KGTQINRATK EGSWKKQGDD 120 KRITRPYSDK QIGGKRILTF YLPKKQRTDW VIHEYYLTKP NSDEQIGDFV LCRLKHKSGK 180 SDHDQQDDPL CDGGEPNSGS CSMVSNVEDQ GSKELGTVLP IPNGNNDEAE HGGGSCSMAF 240 DVENQASKQL ENDLSIPNGN DNEAEHGSSC PITSGFDNEA AADGMLTEAE EYLAFKELEE 300 FFGNEQDVRG SQTNPCYIDK NDLSSSVEGQ PADSCNSSDS DMVEEVRTSM PFDFCYEIFN 360 LKHKKYIEMY LTLSCLSFLI YQFLDEPGHL ALPLHPPSLP QLQSPIYTKL GTTNAHNDES 420 RKRKYPFGDN DLFLTKKNHI DVDRNSSSNS ENQAADAIPE GYSQPGEKLG SDSFQSQKLP 480 SINREPGDFP HDNNLIEWDK LPSITEGFDS SLELSDTFID LYLCDGNTEV ISVSVGEDVE 540 ALSCCLSSPE ETESPGS

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence

MMMMTTSSDR ITLPKGFRFQ PSEEELLSHY LVKKNHQRKD PEIEVIIPEI NVCDHEPRDL  60
PALVFTRAKF LPASPNMEWH FFSRRVFKHS KSKSEGKGKS KGTQINRATK EGSWKKQGDD  120
KRITRPYSDK QIGGKRILTF YLPKKQRTDW VIHEYYLTKP NSDEQIGDFV LCRLKHKSGK  180
SDHDQQDDPL CDGGEPNSGS CSMVSNVEDQ GSKELGTVLP IPNGNNDEAE HGGGSCSMAF  240
DVENQASKQL ENDLSIPNGN DNEAEHGSSC PITSGFDNEA AADGMLTEAE EYLAFKELEE  300
FFGNEQDVRG SQTNPCYIDK NDLSSSVEGQ PADSCNSSDS DMVEEVRTSM PFDFCYEIFN  360
LKHKKYIEMY LTLSCLSFLI YQFLDEPGHL ALPLHPPSLP QLQSPIYTKL GTTNAHNDES  420
RKRKYPFGDN DLFLTKKNHI DVDRNSSSNS ENQAADAIPE GYSQPGEKLG SDSFQSQKLP  480
SINREPGDFP HDNNLIEWDK LPSITEGFDS SLELSDTFID LYLCDGNTEV ISVSVGEDVE  540
ALSCCLSSPE ETESPGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01720.1	3e-22	NAC family protein