PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002119.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 587aa MW: 65687.5 Da PI: 4.6243

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002119.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	98.9	7.3e-31	10	165	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk...............kvkaeekewyfFskrdkky 68 lp+GfrF+P+deel+++yL+kk ++ k ++e +i+e+++ ++eP+dLp+ ++++ + ewyfFs+ k+ Rmu_sc0002119.1_g000005.1 10 LPKGFRFQPSDEELLSHYLEKKQNQPKdPQIEAIIPEINVSDHEPRDLPAlvfkraefldkewftMADSPDMEWYFFSPLVFKH 93 799*****************888774666667***********66899999999988754555677*9877776 PP NAM 69 atgk..............rknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +t+k + nratk+g Wk++g dk++++ +++++g k++L+fy r++ ++tdWv+hey l Rmu_sc0002119.1_g000005.1 94 STSKskgkgkgkdkskstQINRATKEGSWKKQGGDKRITRPySDKQIGGKRILTFYL-RDK--QRTDWVIHEYYL 165 64333333445555555588999************9988999******4.333..48******87 PP

Sequence ? help Back to Top
Protein Sequence Length: 587 aa Download sequence
MMISSGRITL PKGFRFQPSD EELLSHYLEK KQNQPKDPQI EAIIPEINVS DHEPRDLPAL 60 VFKRAEFLDK EWFTMADSPD MEWYFFSPLV FKHSTSKSKG KGKGKDKSKS TQINRATKEG 120 SWKKQGGDKR ITRPYSDKQI GGKRILTFYL RDKQRTDWVI HEYYLTKANS DEQVGDFVLC 180 RLKNKSGKFD HDQQDDPLCD GGEPNSGSCS MVTNVEDQGS KELGTVLPIS NINDDEAEHG 240 GGSCSMAFNV ENQPSKQLET VLPIPNRSDG DTEHGGGSCH VASGFENEAA EFGFLTEEEI 300 NQTFKELIDA VGEYDGNEQE VRGSQTDFCY IDQNDHWISV EDQPADSCNS SDSNMVEKPL 360 DEPGNLALPL HPPPPPNMFE KPLDEPGNLA LPLHPPPSPQ LQSPIYTKLG TTNVENDESR 420 KRKYSFGDND PFLTKKNHID EVDSNSSSNS ENQAADAIPE GYSQPGENLE SESFQSQELP 480 SINREPGDFP HDNNLIEWGK FPPIAEGFDS SLEFSDTFID CYPCDGNTEV ISVSKKLKVL 540 EADNSSKLAA IYRILPFSRK HLLQTVKHTD RVRSPSLRGH YGQTTVA

Sequence ? help Back to Top

Protein Sequence Length: 587 aa Download sequence

MMISSGRITL PKGFRFQPSD EELLSHYLEK KQNQPKDPQI EAIIPEINVS DHEPRDLPAL  60
VFKRAEFLDK EWFTMADSPD MEWYFFSPLV FKHSTSKSKG KGKGKDKSKS TQINRATKEG  120
SWKKQGGDKR ITRPYSDKQI GGKRILTFYL RDKQRTDWVI HEYYLTKANS DEQVGDFVLC  180
RLKNKSGKFD HDQQDDPLCD GGEPNSGSCS MVTNVEDQGS KELGTVLPIS NINDDEAEHG  240
GGSCSMAFNV ENQPSKQLET VLPIPNRSDG DTEHGGGSCH VASGFENEAA EFGFLTEEEI  300
NQTFKELIDA VGEYDGNEQE VRGSQTDFCY IDQNDHWISV EDQPADSCNS SDSNMVEKPL  360
DEPGNLALPL HPPPPPNMFE KPLDEPGNLA LPLHPPPSPQ LQSPIYTKLG TTNVENDESR  420
KRKYSFGDND PFLTKKNHID EVDSNSSSNS ENQAADAIPE GYSQPGENLE SESFQSQELP  480
SINREPGDFP HDNNLIEWGK FPPIAEGFDS SLEFSDTFID CYPCDGNTEV ISVSKKLKVL  540
EADNSSKLAA IYRILPFSRK HLLQTVKHTD RVRSPSLRGH YGQTTVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	2e-24	NAC family protein