PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0002113.1_g000002.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 529aa    MW: 58661.8 Da    PI: 6.3492
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0002113.1_g000002.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.21.9e-20112167156
                                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                ++k +++ ++q++eLe++F+++++p++++r +L+++lgL+++qVk+WFqNrR+++k
  Rmu_sc0002113.1_g000002.1 112 KKKYHRHPPSQIQELESFFKECPHPDEKQRLDLSRRLGLETKQVKFWFQNRRTQMK 167
                                68899999*********************************************999 PP
2START122.55.4e-393235011166
                                HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS
                      START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetl 76 
                                ela ea++elv++++a+ p+W+kss    e +n + + ++f+   +      ++a+r+s +v+ ++  lve+++d + +W+ ++
  Rmu_sc0002113.1_g000002.1 323 ELAGEAMDELVRMVQADTPLWMKSSdggsETLNVELY-RTFSCISTrqsgLVTDASRDSCMVIINSLALVETMMDAN-RWTDMF 404
                                5799*********************998544444444.4443222245669**************************.****** PP

                                S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESS CS
                      START  77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellp 149
                                +    +a+t+  issg      g++q m aelq+lsplvp R   f+R+++q+ +g+w++vdvS+d +q+ +    +v +++lp
  Rmu_sc0002113.1_g000002.1 405 PtlvaRASTIGMISSGpngtrnGTIQMMHAELQMLSPLVPvRPLKFLRFSKQHAEGVWAVVDVSIDIQQDAS----SVNCRRLP 484
                                **********************************************************************87....69****** PP

                                EEEEEEEECTCEEEEEE CS
                      START 150 Sgiliepksnghskvtw 166
                                Sg+++++++ng+skv++
  Rmu_sc0002113.1_g000002.1 485 SGFIVQDMPNGYSKVHI 501
                                ***************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    
MNFGGLISNS GGVGGSRVVA EIDPHSSGGA IAQPHFIPNS MQTSSALSLS IVQKNMDGHN  60
ELDLIAESFD PGIIGRLREE EFDQSRSGSD HFDGASGDDQ GPVDEDDRPR RKKKYHRHPP  120
SQIQELESFF KECPHPDEKQ RLDLSRRLGL ETKQVKFWFQ NRRTQMKTQL ERHENIILRQ  180
ENDKLRAENG VMKEAMSNPI CHNCGGPAIP GQISFDEHQL RIENARLNDE LSRICTLAQK  240
FLGRPISNLA APRSLPSSTA GLDLAMGING MGCLNAGGSN QLSMGFELGD GVGSSSPVMP  300
LMKTVMGMPN DLQHVTDRHV YLELAGEAMD ELVRMVQADT PLWMKSSDGG SETLNVELYR  360
TFSCISTRQS GLVTDASRDS CMVIINSLAL VETMMDANRW TDMFPTLVAR ASTIGMISSG  420
PNGTRNGTIQ MMHAELQMLS PLVPVRPLKF LRFSKQHAEG VWAVVDVSID IQQDASSVNC  480
RRLPSGFIVQ DMPNGYSKVH IDWLIRFLVN FNTMFLMRLL NCIMSLFAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108112RPRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.21e-150HD-ZIP family protein