PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002045.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 361aa MW: 39957.6 Da PI: 9.2326

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002045.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	134.5	9.3e-42	117	245	2	134
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaessss 80 a+kkdrhski T++g+RdRRvRls+++a++fFdLqd LGfdk+skt+eWLl ++ aik+l ++ +s+s+s++++ +++ Rmu_sc0002045.1_g000011.1 117 AVKKDRHSKIFTSQGLRDRRVRLSINVAREFFDLQDLLGFDKASKTLEWLLSNSRNAIKDLEKSkcnnsTSISSSSTSDCDDVL 200 78************************************************************54333111111112222222 PP TCP 81 sasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmrikn 134 + ++++ ++++ k+aa +a+ srakarararertrekm+ ++ Rmu_sc0002045.1_g000011.1 201 DIN-------NEASDDKRRKMKEAA--AIMARASRAKARARARERTREKMCGTS 245 222.......222223344444444..78888*****************875 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MYSSTNNNIS SSGTVFPFPP YNFPFSSSPS SHNSHRPLLP PENTTRGGIF GPHHDQFSLF 60 NNCLLSPGPE STMVNLGGAS SNAIVRSSGD YQQHYGYGNN ITHPYFVSKK VRVPVVAVKK 120 DRHSKIFTSQ GLRDRRVRLS INVAREFFDL QDLLGFDKAS KTLEWLLSNS RNAIKDLEKS 180 KCNNSTSISS SSTSDCDDVL DINNEASDDK RRKMKEAAAI MARASRAKAR ARARERTREK 240 MCGTSTRSHQ ICSQLSLFNE LEPADMNKEP GSTLLSNCQA EYHESVALKR KLKAPSVSNY 300 HDRSLELNPK STEPSSNCGS HINIQFPNAI SQNYWDISGS VFTCPSICAI TTNMNLNSTG 360 S

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MYSSTNNNIS SSGTVFPFPP YNFPFSSSPS SHNSHRPLLP PENTTRGGIF GPHHDQFSLF  60
NNCLLSPGPE STMVNLGGAS SNAIVRSSGD YQQHYGYGNN ITHPYFVSKK VRVPVVAVKK  120
DRHSKIFTSQ GLRDRRVRLS INVAREFFDL QDLLGFDKAS KTLEWLLSNS RNAIKDLEKS  180
KCNNSTSISS SSTSDCDDVL DINNEASDDK RRKMKEAAAI MARASRAKAR ARARERTREK  240
MCGTSTRSHQ ICSQLSLFNE LEPADMNKEP GSTLLSNCQA EYHESVALKR KLKAPSVSNY  300
HDRSLELNPK STEPSSNCGS HINIQFPNAI SQNYWDISGS VFTCPSICAI TTNMNLNSTG  360
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	4e-25	TCP family protein