PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0002017.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 549aa MW: 60249.2 Da PI: 9.8735

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0002017.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	91.2	2.3e-28	162	258	1	88
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................sss 68 a+g+kdrhsk+ T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++ + Rmu_sc0002017.1_g000004.1 162 ATGRKDRHSKVQTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELDELppwnpnsisvqttsspT-- 243 589**************************************************************87777666654322220.. PP TCP 69 sasec..eaesssssasnsssg 88 + +a+++ ++as + Rmu_sc0002017.1_g000004.1 244 ----VpiSAAQDTQNAS---LH 258 ....1222222222222...11 PP

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence
LKLSHHQKYT QNLCDGLAWR QSWFQKSQNT SWRSSSSSTS EKALGKLRAG KVEIQKPNKQ 60 KLILVVAKNK YRSSTTPPAA ATVPLKAGKG NSQYPHSSTS TTAFGEPTIE YAGRKMGESH 120 SNLHHRATTS PSAASRLGLG IRTASSSTTS EIVEARGHIL RATGRKDRHS KVQTAKGPRD 180 RRVRLAAHTA IQFYDVQDRL GYDRPSKAVD WLIKKAKAAI DELDELPPWN PNSISVQTTS 240 SPTVPISAAQ DTQNASLHFS MMEAPSSLSA NRRGAMVGSS GVAELVNQNS SNFLPPSMDS 300 DSIADTIKSF FPMGAATAAE TQSFHPASYP PDLLSRTSSQ SQDLRLSLQS FQDPILLHHH 360 HQAHHHHQTH HENEQAFLTP NHLGFDSSAS TWTEHHHQQQ QQQAELNRFQ RMVAWNNAGG 420 DSNNNGGGGG VEFTFNSQPQ TQSQSPTLQP FLFGQNQFFS SQRGPLQSSN TPSVHAWIDH 480 SDLSDHQHQM APSIQNHHHH HHHQQSSISG MGFASGGFSG FQIPARIQGE EEHDGISDKP 540 SSASSNSRH

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence

LKLSHHQKYT QNLCDGLAWR QSWFQKSQNT SWRSSSSSTS EKALGKLRAG KVEIQKPNKQ  60
KLILVVAKNK YRSSTTPPAA ATVPLKAGKG NSQYPHSSTS TTAFGEPTIE YAGRKMGESH  120
SNLHHRATTS PSAASRLGLG IRTASSSTTS EIVEARGHIL RATGRKDRHS KVQTAKGPRD  180
RRVRLAAHTA IQFYDVQDRL GYDRPSKAVD WLIKKAKAAI DELDELPPWN PNSISVQTTS  240
SPTVPISAAQ DTQNASLHFS MMEAPSSLSA NRRGAMVGSS GVAELVNQNS SNFLPPSMDS  300
DSIADTIKSF FPMGAATAAE TQSFHPASYP PDLLSRTSSQ SQDLRLSLQS FQDPILLHHH  360
HQAHHHHQTH HENEQAFLTP NHLGFDSSAS TWTEHHHQQQ QQQAELNRFQ RMVAWNNAGG  420
DSNNNGGGGG VEFTFNSQPQ TQSQSPTLQP FLFGQNQFFS SQRGPLQSSN TPSVHAWIDH  480
SDLSDHQHQM APSIQNHHHH HHHQQSSISG MGFASGGFSG FQIPARIQGE EEHDGISDKP  540
SSASSNSRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	9e-72	TCP family protein