PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001933.1_g000007.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 430aa MW: 45951.1 Da PI: 8.2252

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001933.1_g000007.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	116.9	2.6e-36	57	127	3	73
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ Rmu_sc0001933.1_g000007.1 57 PKRSSTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAM 127 799************************************************************88888444 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MLQNQEFEPG QRTAAAAGVD PTDRAETDSP PSQALVLKEE QEPEQRSPAL TMAVSKPKRS 60 STKDRHTKVE GRGRRIRMPA TCAARIFQLT RELGHKSDGE TIRWLLEHAE PAIIAATGTG 120 TVPAIAMSVN GSLKIPTTAP DPKPGDPSKK RKRPCNSDYV DLNDSVSAGL APLTATTLQQ 180 PTPPPPPQPV HQSMVPMWAV TSNGVVPGTF FMVPQTQAPH LFTFPATAAA SPFFNMSARP 240 ISSFVSSMGN VAAPVSNTLS FLSPVPIPPA SATITNSTDA TTTTLRDFTL EIRDKTELQF 300 MSGVPQCDHV KGGSGAQGGD ETGPCEGMET RGCFRGGGFV FLGGAGGFRV MQGKWKCDGE 360 DEDGAGVMVT LRVEHQRSMN RKCHNNEKTM RGTKYSPRSV DRGEVKIECV FVPPPTSAPT 420 LVFVVDAARG

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MLQNQEFEPG QRTAAAAGVD PTDRAETDSP PSQALVLKEE QEPEQRSPAL TMAVSKPKRS  60
STKDRHTKVE GRGRRIRMPA TCAARIFQLT RELGHKSDGE TIRWLLEHAE PAIIAATGTG  120
TVPAIAMSVN GSLKIPTTAP DPKPGDPSKK RKRPCNSDYV DLNDSVSAGL APLTATTLQQ  180
PTPPPPPQPV HQSMVPMWAV TSNGVVPGTF FMVPQTQAPH LFTFPATAAA SPFFNMSARP  240
ISSFVSSMGN VAAPVSNTLS FLSPVPIPPA SATITNSTDA TTTTLRDFTL EIRDKTELQF  300
MSGVPQCDHV KGGSGAQGGD ETGPCEGMET RGCFRGGGFV FLGGAGGFRV MQGKWKCDGE  360
DEDGAGVMVT LRVEHQRSMN RKCHNNEKTM RGTKYSPRSV DRGEVKIECV FVPPPTSAPT  420
LVFVVDAARG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	5e-67	TCP family protein