PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001852.1_g000023.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 392aa MW: 44084.2 Da PI: 8.3402

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001852.1_g000023.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	51.9	1.3e-16	15	106	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 ffk+l+ + + l +pkkf++++g+ s + l+ +sg +Wev + ++++++++++kGW F k L+ g f++F + Rmu_sc0001852.1_g000023.1 15 FFKILLENTSRD-IKLKIPKKFVKRYGEH--LSNSVCLKIPSGCEWEVGV--TRSGNKVWFEKGWPAFSKFYSLDYGAFLLFGY 93 778885544444.459********955..8889***********..**************************** PP -SSSEE..EEEEE-S CS B3 85 dgrsefelvvkvfrk 99 +g+s+f v +f++ Rmu_sc0001852.1_g000023.1 94 EGNSKF--QVCIFDT 106 9999..9999987 PP
2	B3	38.2	2.5e-12	200	263	20	86
HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 20 kkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 +f++++ ++++ ++l + +sW vkl++ +k+s + +++GW F ++n L +gD+++F+l++ Rmu_sc0001852.1_g000023.1 200 ASFVKSFATQEQQL--VKL-QVGDKSWPVKLSIyDKYS-TAKFSAGWHAFSNDNCLTDGDVCIFELIQ 263 45666665554443..443.3466*****6636666.567999******************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MSGVCPTFCS TTPHFFKILL ENTSRDIKLK IPKKFVKRYG EHLSNSVCLK IPSGCEWEVG 60 VTRSGNKVWF EKGWPAFSKF YSLDYGAFLL FGYEGNSKFQ VCIFDTSATE IAYPIHVEES 120 DNINCEDDNS VEVLDDFPHS CPKTREKSPL PSPRPHKRRR ISSSSKENFQ GKNDIIRKEY 180 GGGLSSTQSF RKGTHKNVRA SFVKSFATQE QQLVKLQVGD KSWPVKLSIY DKYSTAKFSA 240 GWHAFSNDNC LTDGDVCIFE LIQMNDVREK SPSTLLCSGD QWPARSPATG DRTPANGDRT 300 PANGDRIPAT NDRIPGTESK PKNPDDEYNR SHRCIRPDRE SSSDADVNDP NSSDAADVRP 360 KIHFGKRSDL NQNQVEPNPA TSNRRPPQLL PY

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MSGVCPTFCS TTPHFFKILL ENTSRDIKLK IPKKFVKRYG EHLSNSVCLK IPSGCEWEVG  60
VTRSGNKVWF EKGWPAFSKF YSLDYGAFLL FGYEGNSKFQ VCIFDTSATE IAYPIHVEES  120
DNINCEDDNS VEVLDDFPHS CPKTREKSPL PSPRPHKRRR ISSSSKENFQ GKNDIIRKEY  180
GGGLSSTQSF RKGTHKNVRA SFVKSFATQE QQLVKLQVGD KSWPVKLSIY DKYSTAKFSA  240
GWHAFSNDNC LTDGDVCIFE LIQMNDVREK SPSTLLCSGD QWPARSPATG DRTPANGDRT  300
PANGDRIPAT NDRIPGTESK PKNPDDEYNR SHRCIRPDRE SSSDADVNDP NSSDAADVRP  360
KIHFGKRSDL NQNQVEPNPA TSNRRPPQLL PY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	161	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	2e-35	B3 family protein