PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001814.1_g000020.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 498aa    MW: 56191.8 Da    PI: 4.5144
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001814.1_g000020.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS253.76.7e-781204832373
                       GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalk 82 
                                +elL++ Aeav++++   a++++++l++l   s++g +++++la++ft++L+ +  +      +   p e + ++ ++++++++
  Rmu_sc0001814.1_g000020.1 120 TELLFAGAEAVEAQNWVFASNIITKLNTLlaGSENGdNSFNKLATFFTQGLHYKTIN------SPEVPHEPAVSRNTDTMSSFQ 197
                                789*************************9976777768**************99888......334444555556789999*** PP

                       GRAS  83 lfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerL 165
                                +++e+sP++kf+h+taNqaIlea++++e +H+iDfdi++G QWp+L+  La R+ +  +sl++T+v   +++s+   ++tg+rL
  Rmu_sc0001814.1_g000020.1 198 MLQELSPFVKFAHFTANQAILEATQEDEDIHVIDFDIMEGSQWPSLMVDLAMRKgRCCASLKVTAVTV-DQQSAALAQQTGRRL 280
                                ******************************************************44467********9.55789999******* PP

                       GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.... 245
                                ++f e++++ f f+ +++ +  + ++ +++v   +a++ n++++  +++++s sl +   ++L  + +lsPk++v+v++e    
  Rmu_sc0001814.1_g000020.1 281 KEFSESINLLFIFDHMMMAT--EEDFAKIEVVA-DAVVANCMIHQLHMPNRSISLVK---AFLGGMSKLSPKLIVLVQEElfnf 358
                                **************965554..44569998876.67788999999999999999999...********************7654 PP

                       GRAS 246 adhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpv 327
                                +++ s  F+e f+eal++y +l dsl ++++ e     + +E+e+l+ +i + v +   e    +e  + W++ + +  GFk++
  Rmu_sc0001814.1_g000020.1 359 SKMPSMFFAEFFSEALHHYNSLCDSLLTSFSGEYkMGLRQIEKEVLRIKILESVRQFACE----KEDRMLWEDCFASlKGFKSI 438
                                5557779*******************88877766366789**************999999....555566*****9868***** PP

                       GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                pls+ +++qak+l++ ++ +gy v++e+g l l+Wk+rpL+++S W
  Rmu_sc0001814.1_g000020.1 439 PLSSCNVSQAKYLVSLFN-RGYWVQHEKGRLALCWKSRPLTTASIW 483
                                ******************.*************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    
MEVELIDHPF NPSYDLYDCS FEYDSSFQTS DLFTPCTTNV EQNSDHECLN RLLQIEAQLM  60
DIDSSISSTG SDVIGLDGGV DSEFASYISE EAPENVHVST ESNSLLKEIQ IDLLEESSLT  120
ELLFAGAEAV EAQNWVFASN IITKLNTLLA GSENGDNSFN KLATFFTQGL HYKTINSPEV  180
PHEPAVSRNT DTMSSFQMLQ ELSPFVKFAH FTANQAILEA TQEDEDIHVI DFDIMEGSQW  240
PSLMVDLAMR KGRCCASLKV TAVTVDQQSA ALAQQTGRRL KEFSESINLL FIFDHMMMAT  300
EEDFAKIEVV ADAVVANCMI HQLHMPNRSI SLVKAFLGGM SKLSPKLIVL VQEELFNFSK  360
MPSMFFAEFF SEALHHYNSL CDSLLTSFSG EYKMGLRQIE KEVLRIKILE SVRQFACEKE  420
DRMLWEDCFA SLKGFKSIPL SSCNVSQAKY LVSLFNRGYW VQHEKGRLAL CWKSRPLTTA  480
SIWVPLTYKI KENHVNPF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.12e-47GRAS family protein