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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0001809.1_g000041.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 1052aa MW: 115749 Da PI: 4.9951 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.5e-18 | 37 | 83 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av+ + g++Wk+Ia+++ Rt+ qc +rwqk+l Rmu_sc0001809.1_g000041.1 37 KGQWTPEEDEILRRAVQSFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83 799****************************9.************986 PP | |||||||
2 | Myb_DNA-binding | 67 | 3.4e-21 | 89 | 135 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++v++vk++G++ W+tIa++++ gR +kqc++rw+++l Rmu_sc0001809.1_g000041.1 89 KGPWSKEEDEIIVELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 46.5 | 8.5e-15 | 141 | 183 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT++E++ l++a++ +G++ W+ + ++ gRt++ +k++w+ Rmu_sc0001809.1_g000041.1 141 KEAWTQDEELALIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 183 579*******************.*********.***********8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1052 aa Download sequence |
MDGDRTNSTA EGSGGDSIQR ARALHGRSSG PTRRSTKGQW TPEEDEILRR AVQSFKGKNW 60 KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII VELVKKYGPK KWSTIAQHLP 120 GRIGKQCRER WHNHLNPGIN KEAWTQDEEL ALIRAHQIYG NKWAELTKFL PGRTDNAIKN 180 HWNSSVKKKL DSYLKSGLLP DLEGTPHVGH QNQPIISSCS RVQNSGDDSA PRGAEGEEIS 240 ECSQDSNVAG CFQSRTEMVN VVLHTRDRSH IREVSRLGND PSSSPASCSE PYYPSMGDAT 300 FSIPEIPPEI VSSSKFIEHS FSHDAGESMS GDFQFNMQEL TNISSLESEQ GASGMHTHCM 360 SSNEIHDVVN FPFQTAGAFP ASTSMGNMAD GSVKSERMLI SDDECCRALF SEAINQGYFS 420 RDFTNGLNMV DLIACTDSLL LQSSSNLQMS ETGRSSQLYC PLNSDVVGTS CSQPVSAHNG 480 PLIFAGEANN LFRVQEQEYV TNSEDGFVYT NDTARSPSNV VGNETRMQEQ SDLVEDPSNL 540 VPVNTFDSGL DTQTSPSLDV RSDVHTEQQD DGALCYEPPR FPSLDIPFLS CDLVQSGNDM 600 QQEYSPLGIR QLMMSSMNCL TPFRLWDSPS RDGSPDAVLK SAAKTFTGTP SILKKRHRDL 660 LSPLSPLSDR RIDKKLGTDV TSSLARDFSR LEVMFEDSET QEAPLHYPSS NQQRTSDAHE 720 EDKENMDTCE TRIEEGTDTV AISADEIAQK HFDDSESQEK MKQGNADVDA KTKADAVPSS 780 HDAQQSSGVL AEHNTNDLLL YSPDQAGCKA EKALSLSAGT PKVQHSKSFS AKQCSSVITP 840 TITVKKRESY LVTQTCIQSD LLSAPLETTS DNAGNGASTE TIFGVTPLKR SIDSPSAWKS 900 PSAWKSPSAW KSPWFINSFL PGPRVDTEIT IEDIGFFMSP GDRSYDAIGL MKQISEHTAS 960 AYANAQEVLG NETPESLLKE RRKDHGIVDS DKNLAPPNQL GSSSLSAPNV VVERRTLDFS 1020 ECETPGKGKE SGKFLNAKSF SSPSSYLLKG CR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.2 | 0.0 | MYB family protein |