PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001792.1_g000031.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 298aa    MW: 34595.1 Da    PI: 4.9174
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001792.1_g000031.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.92.7e-2551352128
                        NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikev.diy.kvePwdLp.k....kvkaeekewyfFskrdkkyatgkrknra 77 
                                p+G+rFhPtd+elv++yL++k++  + ++    ++++ d y k+ePw+   k    ++ ++ + ++fF+kr+k +++g+r  r+
  Rmu_sc0001792.1_g000031.1   5 PVGVRFHPTDNELVSYYLRNKATMGDgFQS-PYVSDCpDFYgKWEPWTVWdKyggnSHVEDGEPLFFFTKRKKLSPNGTRFDRK 87 
                                89*******************988884555.6699998988578*****7334443222244577******************* PP

                        NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                + +g+W+++   k v   +g+++glk+ + +  g +++ ++  W+mhey+l
  Rmu_sc0001792.1_g000031.1  88 MGTGTWSNQYFVKVVE--EGKVIGLKRDFRYE-GGSSSDQNNAWLMHEYEL 135
                                *******998866665..599*********98.55555699********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    
MEGFPVGVRF HPTDNELVSY YLRNKATMGD GFQSPYVSDC PDFYGKWEPW TVWDKYGGNS  60
HVEDGEPLFF FTKRKKLSPN GTRFDRKMGT GTWSNQYFVK VVEEGKVIGL KRDFRYEGGS  120
SSDQNNAWLM HEYELNKKDV TVLCTLRKKP TKRPPRGSET KNESVDENQR KRKLDEVVDD  180
LEQDLDERRK LIRDLDQRRK LRANRPRKEE TSCEEQGGSI TIDHHQGSSS RTPCDEAYRP  240
ELVPDLATAD DIVFTSYDFF ASTPDDPLHV ECNEFLDQFY EDNNFKSSTD EQGGLSYE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.12e-17NAC family protein