PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001770.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GATA
Protein Properties Length: 382aa    MW: 41822.7 Da    PI: 5.8537
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001770.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA542.3e-17290323134
                       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                                C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Rmu_sc0001770.1_g000004.1 290 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 323
                                99*****************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    
MSSPDMKNSQ QNSGREEAGE SWFIHWFISQ TSQDKMITPN FVDEIDCGSF FDNIDDLMED  60
VDSVLGPAPD CNSAFPSSLS LWDGHSAAAA PLPPPDAAVF SGNGDSDFSS ELPVPYEEMV  120
HLEWLSNFVE NSEYYGGNLT INKQQESSLV NKESSHQQFH TSSPISVLDS SSSCSGEKNV  180
LEGSIAPGRR GRARSKRPRP ATFNPRSAIQ LISPASSVSE IDNPLQQHSL FAPKVFSDSE  240
NFAESRPAVK MPKQASGEQK KKKRIKLPPP PKVPGELNED TPVQGSVRKC LHCEITKTPQ  300
WRAGPMGPKT LCNACGVRYK SGRLFPEYRP AASPTFVPAL HSNSHKKVIE MRTKGGEMAA  360
VPDNSIPELI PNNNSSISLD YM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196200KRPRP
2260267KKKKRIKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-42GATA family protein