PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001712.1_g000003.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 310aa    MW: 34589.6 Da    PI: 8.7398
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001712.1_g000003.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000225779123
                               EEETTTTEEESSHHHHHHHHHHT CS
                    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                               y+C+ C + F++   L  H+++H
  Rmu_sc0001712.1_g000003.1 57 YSCSFCRREFRSAQALGGHMNVH 79
                               99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MEQARYWMWA KRKHSSLMSA SHEVQVPSHD ESSWEEQAFA EDAAGPLGGC IWPPRSYSCS  60
FCRREFRSAQ ALGGHMNVHR RDRARLKQSP NNDQNVETAH HHQNHQDISV QINPFSSSLG  120
TFHQYPSHHQ VCALVYNPNN PSSDPPSSPS RVSTQLPGKD QNCGQEKITL NIPTSRSSSA  180
SSPPSRSILT ANRYYNNSVA RKTEAAEKIS RIVESGPCRA NKGADYVTTD LSVSLNLVVR  240
CARPSVSAGG DENEAIISCK RRRIMEEKQS SKDSLPLFLK SEGFEVLSRP SSIEELDLEL  300
RLGHRPKVIK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260264KRRRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.15e-34C2H2 family protein