PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001680.1_g000002.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 674aa MW: 74046.2 Da PI: 5.2614

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001680.1_g000002.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.8	1.9e-11	624	672	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +rW+ E++ l +v+++G g+Wk+I t + Rt ++k++w++ Rmu_sc0001680.1_g000002.1 624 KRWSLHEEDTLRTGVQKYGRGNWKLILDTYRdvfEERTKVDLKDKWRNM 672 59******************************9**********95 PP

Sequence ? help Back to Top
Protein Sequence Length: 674 aa Download sequence
MDLDVDVSRW VLEFLFRDRE KESVAKRVLG VLPLSNHDWR LKKTLLLRTI ESQILDEASV 60 TETLLESLES IEVLDRGQGL PITDSMRAAY CAVATDCTVK FLAAFRGKPS GKYMEAVDRI 120 WRGRVRILEE SEGCELVSAE MKETRDEVEA AIWDIKVSKK LASLNTRNDA LALVAAYVEE 180 ALGILGPPFI AWAVRFNKHK GSLSSEADQV AVESDGNAGD GCQVQVPTAN GADLDVQMAN 240 GAVLDVQMGN GVDLGDGSKL EVNGANVRDG SELEAQRGAT VNSGSEQEAQ RANGPNVNSE 300 FELEAQRVNG ANDGSARSEQ EPQRAKGDNV SDACEREAHD TNVGDESESQ IVTVAYFNSR 360 SEMGHYHTMN GVQLQIVGAE RLPPNGNHRV LSSEPATKEK ETPRSTGLRR RHGPVKIRDA 420 EDVGTEASAG IYNSVSSAEV RKVQEELKSS VLALQAAVTD PLPYALRKSE IVRSELGIRP 480 VDHVSGENGG AANPSVAKCT EPDQFNNDNH GNHTSHQNDV SQPSGKETDA PNLSVDKGKG 540 TEYVQTGDAN PGNPSCSFPN NVSQAGLMER NSTAHTYEWD DSLGMSPEQT NSKGRLHLPS 600 PKRNAVSPLK KYEDKRSFKR RKVKRWSLHE EDTLRTGVQK YGRGNWKLIL DTYRDVFEER 660 TKVDLKDKWR NMTK

Sequence ? help Back to Top

Protein Sequence Length: 674 aa Download sequence

MDLDVDVSRW VLEFLFRDRE KESVAKRVLG VLPLSNHDWR LKKTLLLRTI ESQILDEASV  60
TETLLESLES IEVLDRGQGL PITDSMRAAY CAVATDCTVK FLAAFRGKPS GKYMEAVDRI  120
WRGRVRILEE SEGCELVSAE MKETRDEVEA AIWDIKVSKK LASLNTRNDA LALVAAYVEE  180
ALGILGPPFI AWAVRFNKHK GSLSSEADQV AVESDGNAGD GCQVQVPTAN GADLDVQMAN  240
GAVLDVQMGN GVDLGDGSKL EVNGANVRDG SELEAQRGAT VNSGSEQEAQ RANGPNVNSE  300
FELEAQRVNG ANDGSARSEQ EPQRAKGDNV SDACEREAHD TNVGDESESQ IVTVAYFNSR  360
SEMGHYHTMN GVQLQIVGAE RLPPNGNHRV LSSEPATKEK ETPRSTGLRR RHGPVKIRDA  420
EDVGTEASAG IYNSVSSAEV RKVQEELKSS VLALQAAVTD PLPYALRKSE IVRSELGIRP  480
VDHVSGENGG AANPSVAKCT EPDQFNNDNH GNHTSHQNDV SQPSGKETDA PNLSVDKGKG  540
TEYVQTGDAN PGNPSCSFPN NVSQAGLMER NSTAHTYEWD DSLGMSPEQT NSKGRLHLPS  600
PKRNAVSPLK KYEDKRSFKR RKVKRWSLHE EDTLRTGVQK YGRGNWKLIL DTYRDVFEER  660
TKVDLKDKWR NMTK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G15720.1	3e-13	MYB_related family protein