PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0001650.1_g000018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 192aa MW: 22248.4 Da PI: 9.4469 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 28.4 | 2.1e-09 | 56 | 100 | 4 | 47 |
-SHHHHHHHHHHHHHHHHHHHHHHHH.HHT-EEEEEEE-TTSEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSv.LCdaevaviifsstgkly 47 ++ks+ v+fskRr+g++ KA L+ d+++av+++s+ + y Rmu_sc0001650.1_g000018.1 56 KEKSKIDVSFSKRRKGLFGKAARLCKdFSDTRIAVLVVSKASRPY 100 5788899******************659***********987655 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence |
MEATIGRKRK GRTHTSEEEE ENRMLKKKMQ TTLGRKRKEK THTSEEEEEN CRQTKKEKSK 60 IDVSFSKRRK GLFGKAARLC KDFSDTRIAV LVVSKASRPY AFGHSSVDEV LNDLYHIQPT 120 TTESIEGLNL MRHQHEQKML MVVKEEIENE LRACQTVEGL ASLREKYLKL DEDIKKRLRS 180 CSSEEISFEG GV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 35 | 40 | RKRKEK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G60920.1 | 9e-12 | M-type_MADS family protein |