PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001643.1_g000009.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 540aa MW: 60557.9 Da PI: 6.1065

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001643.1_g000009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	107.1	2.7e-33	22	136	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................... 65 +g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l+++ Rmu_sc0001643.1_g000009.1 22 TGRKDRHSKVVTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKTAIDKLAELppwhptgvaanatqgevpng 105 79**************************************************************88887777766655555544 PP TCP 66 ..........ssssaseceaesssssasnsssg.............k 89 + +s+ss g + Rmu_sc0001643.1_g000009.1 106 agtsdmvisaE----------QSESS------GynfqlqrqigdntD 136 33333332210..........11111......111112222222220 PP

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence
MGMKSVGGEI VQVQGGHIVR STGRKDRHSK VVTAKGPRDR RVRLSAHTAI QFYDVQDRLG 60 YDRPSKAVDW LIKKAKTAID KLAELPPWHP TGVAANATQG EVPNGAGTSD MVISAEQSES 120 SGYNFQLQRQ IGDNTDHNES SFIPQSLDSD TIADTMKSFF PTSSAASTIN FQSYPSDIIS 180 RTTNLNPNQD LGLSLHSFQD QGLIHHTQQS HQDTTHHNDQ IQTLFAVPAT AGFDSSAYQR 240 MVAWSSDSSH ENRGFVFNNM PALPHQQALM GQQQSSSAAP TFAQRGTLQS SFTPSIRSWS 300 DEIQMASQRT QQHPVHHSSI FGTRQQRRFG SPIFYFLSQL QPPLIRPTPS FPNCTNWEGL 360 DWRQEEEEEE DSIECCTEGR KGFSLARKLI ELRFVMVVEE VIVHLVEGED AIQDPFFYVC 420 GRLLSQKRVL LPPFSVAISR IWGLKDRVRI CEEEGGILVF QFKEQETKDH VLNGGPWFFN 480 NSMLLLVDYD GIQDLAEISL NSMEVWVAVK GLCMAMRNEH ALTLIENSLG LFVRYDQAAL

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence

MGMKSVGGEI VQVQGGHIVR STGRKDRHSK VVTAKGPRDR RVRLSAHTAI QFYDVQDRLG  60
YDRPSKAVDW LIKKAKTAID KLAELPPWHP TGVAANATQG EVPNGAGTSD MVISAEQSES  120
SGYNFQLQRQ IGDNTDHNES SFIPQSLDSD TIADTMKSFF PTSSAASTIN FQSYPSDIIS  180
RTTNLNPNQD LGLSLHSFQD QGLIHHTQQS HQDTTHHNDQ IQTLFAVPAT AGFDSSAYQR  240
MVAWSSDSSH ENRGFVFNNM PALPHQQALM GQQQSSSAAP TFAQRGTLQS SFTPSIRSWS  300
DEIQMASQRT QQHPVHHSSI FGTRQQRRFG SPIFYFLSQL QPPLIRPTPS FPNCTNWEGL  360
DWRQEEEEEE DSIECCTEGR KGFSLARKLI ELRFVMVVEE VIVHLVEGED AIQDPFFYVC  420
GRLLSQKRVL LPPFSVAISR IWGLKDRVRI CEEEGGILVF QFKEQETKDH VLNGGPWFFN  480
NSMLLLVDYD GIQDLAEISL NSMEVWVAVK GLCMAMRNEH ALTLIENSLG LFVRYDQAAL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	7e-72	TCP family protein