PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001576.1_g000018.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LFY
Protein Properties Length: 281aa    MW: 31383.1 Da    PI: 7.3105
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001576.1_g000018.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY401.11.4e-12221264148386
                    FLO_LFY 148 glseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeeg............ 219
                                glseepvq+eke++gsgg+   ++e+v+a+ek+     kk ++ ++    ++++++  d+deeeee+e++ +            
  Rmu_sc0001576.1_g000018.1  21 GLSEEPVQQEKEMVGSGGGA--AWEVVTAAEKR-----KKLRRIRRGVGGHRSSNEGVDDDEEEEENENGINggggehpnrala 97 
                                89**************9998..99999998433.....3332223333333333333444444433333333466788888888 PP

                    FLO_LFY 220 sgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmr 303
                                ++ +g+erqrehPfivte+gevargkknGLDYLf+LyeqC+efL+qvq+iak+rGekcPtkvtnqvfryakk ga+yinkPkmr
  Rmu_sc0001576.1_g000018.1  98 MRGGGRERQREHPFIVTEAGEVARGKKNGLDYLFHLYEQCHEFLTQVQNIAKQRGEKCPTKVTNQVFRYAKKEGANYINKPKMR 181
                                777889****************************************************************************** PP

                    FLO_LFY 304 hYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
                                hYvhCYalhcLdee snalrr+ k rgen+Gawrqacy+p+v+iaa qgwdida+f+ahp+Ls+WYvPtkLrqLCh+er++a+
  Rmu_sc0001576.1_g000018.1 182 HYVHCYALHCLDEEGSNALRRECKLRGENIGAWRQACYRPVVEIAAGQGWDIDAIFSAHPQLSVWYVPTKLRQLCHAERNNAT 264
                                ********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    
MEVLTYMSII VIFGAWDGWT GLSEEPVQQE KEMVGSGGGA AWEVVTAAEK RKKLRRIRRG  60
VGGHRSSNEG VDDDEEEEEN ENGINGGGGE HPNRALAMRG GGRERQREHP FIVTEAGEVA  120
RGKKNGLDYL FHLYEQCHEF LTQVQNIAKQ RGEKCPTKVT NQVFRYAKKE GANYINKPKM  180
RHYVHCYALH CLDEEGSNAL RRECKLRGEN IGAWRQACYR PVVEIAAGQG WDIDAIFSAH  240
PQLSVWYVPT KLRQLCHAER NNATASSSAS GGSGTADHLP Y
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-101LFY family protein