PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0001571.1_g000004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | NAC | ||||||||
Protein Properties | Length: 255aa MW: 29891.3 Da PI: 5.6756 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 77.2 | 3.7e-24 | 8 | 138 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiy.kvePwdLpk......kvkaeekewyfFskrdkkyatgkrknrat 78 ppG+rF+P e+l+v+yL++ ++g++++ ++ +d+y + ePw++ + +++++++yf +++++k+++gkr +r++ Rmu_sc0001571.1_g000004.1 8 PPGYRFRPDTEQLLVHYLRPILDGEDFPQ-GLVPFCDLYgEQEPWQIWDafkelcEKDQGRTDLYFITQHKTKTPKGKRISRTV 90 89************************999.89*****993469****63255554333355688******************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+Wk +vls++++++g +k + + ++ ++++ +W+mhe++l Rmu_sc0001571.1_g000004.1 91 GRGTWKGDDAPGKVLSASQRVIGRRKRFHYK--NDGSTQNGRWLMHEFEL 138 ***************************9997..55556789*******97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence |
MAVHDDPPPG YRFRPDTEQL LVHYLRPILD GEDFPQGLVP FCDLYGEQEP WQIWDAFKEL 60 CEKDQGRTDL YFITQHKTKT PKGKRISRTV GRGTWKGDDA PGKVLSASQR VIGRRKRFHY 120 KNDGSTQNGR WLMHEFELDT SLLRNKRKAK DYVLCILRKN NRSVKKNSEG QEGQEEDEMS 180 WDGGDDQQDG DLPEPEFVEE ETTTTQRPDE LRKYVMEFEV YLKKQTADQA VKRKDHKDSH 240 KMSLEDIENH LMSDD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15500.1 | 2e-17 | NAC family protein |