PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001556.1_g000007.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 244aa    MW: 27561.4 Da    PI: 5.1151
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001556.1_g000007.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-135496754
                               HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                        HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                                 Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  Rmu_sc0001556.1_g000007.1 54 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 96
                               57*********************66......****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MDNIGDEYKH YWETNMFLQT EELDSWGLDE AFSGYYDSSS PDGAASSMTS KNIVSERNRR  60
KKLNERLFAL RAVVPNISKM DKASIIKDAI DYIQELHDQE KRIQAEIMDL ESGKAKKGVI  120
GSSDFEQELP VLLRSKKKKT EQLYDSGGSR TSSIEVLELR VTYMGEKTVV VSLTCSKRTD  180
TMVKLCEVFE SLKLKIITAN ITAFSGRVLK TVFIEADEEE KDHLKVKIET AIAALNDPQS  240
PMSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-104bHLH family protein