PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001530.1_g000005.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 720aa    MW: 81534.4 Da    PI: 8.5369
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001530.1_g000005.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.51.9e-1615105199
                                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                                ffkv    d ++s  l +p kf++++g     sk ++l+ +sg +Wev++  + ++++ +++kGW+eF +   L+ g f++F++
  Rmu_sc0001530.1_g000005.1  15 FFKVI--VDETSSIKLKIPPKFVRKYGDY--LSKSVRLKLPSGCQWEVEV--TESDSEAWFEKGWQEFFEFYSLDCGHFLLFTY 92 
                                78888..89999999***********866..8889***************..******************************** PP

                                -SSSEE..EEEEE-S CS
                         B3  85 dgrsefelvvkvfrk 99 
                                +g+s f   v +f++
  Rmu_sc0001530.1_g000005.1  93 QGNSMF--EVCIFDR 105
                                **9999..9999987 PP
2B333.76.5e-11202296699
                                ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.......-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                         B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesg.......rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                                +++++  +  l +p +f+ ++ +  ++   ++l+  +         +Wev+l   +++g+ +++kGW eF +   L+ g f+vF
  Rmu_sc0001530.1_g000005.1 202 MQPHYIHNYTLNIPLRFIMSFTKHGRQ--VVKLQVGDRfwsacfgSEWEVEL--IRCKGKAWFEKGWPEFSRFCCLDCGNFLVF 281
                                577788888899*****9888644334..5555555555679999*******..99999999********************** PP

                                EE-SSSEE..EEEEE-S CS
                         B3  83 kldgrsefelvvkvfrk 99 
                                +++g+s+f   v +f++
  Rmu_sc0001530.1_g000005.1 282 RYEGNSTF--EVCIFDR 296
                                ****9999..9999987 PP
3B352.87.1e-17440530187
                                EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.....-EEEEEE...EEETTEEEE-TTHHHHHHHHT--T CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.....rsWevkliy.rkksgryvltkGWkeFvkangLke 76 
                                ffk+ +++++  +++l+lp +fa++h  +++       tl+ +sg     ++W+vk++y   +s++ +l  GW+ Fv++n+Lk+
  Rmu_sc0001530.1_g000005.1 440 FFKISMKPSNIHKSILSLPSEFAKRHliKLPAGI---ATLQVSSGrtssvKTWSVKFKYdFENSKAQLLN-GWSAFVRDNNLKV 519
                                99************************87555433...5555566666899*********64555555555.************* PP

                                T-EEEEEE-SS CS
                         B3  77 gDfvvFkldgr 87 
                                +D++ F l++r
  Rmu_sc0001530.1_g000005.1 520 RDVCGFILMDR 530
                                ******98765 PP
4B351.22.3e-16635719998
                                HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                         B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                                +  ks ++++p  f++++ ++   ++tl+l+  + rsW vk+i r +++++ +++GW  F+k+ngL+ gD+++F+l++ ++  l
  Rmu_sc0001530.1_g000005.1 635 HKEKS-NVSVPAAFVKSFIKEA--NQTLKLQV-KDRSWPVKVI-RFGKNSVKFSGGWAAFAKENGLEKGDVCIFELMEINDIVL 713
                                44445.59*******9995443..44677554.66*******5.66777899************************98899999 PP

                                EEEEE- CS
                         B3  93 vvkvfr 98 
                                +v++fr
  Rmu_sc0001530.1_g000005.1 714 KVHIFR 719
                                999998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    
MSAFRPPFSA ATPRFFKVIV DETSSIKLKI PPKFVRKYGD YLSKSVRLKL PSGCQWEVEV  60
TESDSEAWFE KGWQEFFEFY SLDCGHFLLF TYQGNSMFEV CIFDRTATET EYPIIIDDSY  120
VDDANSIEIL NVFTPYPKTR DKSPSPSARP SRRKRTLGPT SEAKMKGKED DFSRKKDGGG  180
SSKALERAKA FKSENPSIMI AMQPHYIHNY TLNIPLRFIM SFTKHGRQVV KLQVGDRFWS  240
ACFGSEWEVE LIRCKGKAWF EKGWPEFSRF CCLDCGNFLV FRYEGNSTFE VCIFDRTATE  300
IDYPITVPKI YEDENDDLSI EILEFPPCPK TSEKPSLLYP DYPLCKKMRP SSSTRSDRIS  360
ENESAQPDSM VLFEKSMPNK DSHCSNSEMK GEGDFLAKKN TAGGSSCTPR FLKQTVDHEV  420
IENAIAPQRA TAFKLDNNPF FKISMKPSNI HKSILSLPSE FAKRHLIKLP AGIATLQVSS  480
GRTSSVKTWS VKFKYDFENS KAQLLNGWSA FVRDNNLKVR DVCGFILMDR IELLFEVALP  540
NVEAPNFPLP AGEGRGVTIQ VEEKRSPIIK VESECDMNCE IGLSSSLAIA KKPIISGQVT  600
HWPSSSLRDS RVNLEAGNKF VPKNPYFLVT LGSLHKEKSN VSVPAAFVKS FIKEANQTLK  660
LQVKDRSWPV KVIRFGKNSV KFSGGWAAFA KENGLEKGDV CIFELMEIND IVLKVHIFRG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164176KMKGKEDDFSRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-25B3 family protein