PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0001527.1_g000066.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | bHLH | ||||||||
Protein Properties | Length: 240aa MW: 25261.3 Da PI: 10.96 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.4 | 4.5e-07 | 142 | 168 | 5 | 30 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 5 hnerErrRRdriNsafeeLrellPk.a 30 h+++Er RR+ri +++ L+el+P+ + Rmu_sc0001527.1_g000066.1 142 HSIAERLRRERIAERIRALQELVPSvN 168 99**********************955 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence |
MANNPSEAQA DDFLEQILGL PNFASADANL TGGDGGLAGA PSSMMLQLSS GDGSGHMGGG 60 GYHGGVFPLG LSLEQGKAGF LKPEEASGSG KRFRDDVVDS RASAVKNVFH GQPISSTVAA 120 APHPPAMRPR VRARRGQATD PHSIAERLRR ERIAERIRAL QELVPSVNKV AEADMVQNFR 180 SGFRASPLHG NSASRAHGIS ASRRLRVMAS LRHGYGRGEE MDAADRGVKV AAPFSRSRSG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 152 | RLRRER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.2 | 1e-29 | bHLH family protein |