PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0001526.1_g000046.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | TCP | ||||||||
Protein Properties | Length: 213aa MW: 23284.2 Da PI: 8.52 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94.1 | 2.9e-29 | 49 | 140 | 3 | 88 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssaseceaess 78 +kd hsk++T++g+Rd R+Rl a++a++f+d+qd+LG+d++sk ++W +++ak+ai+el+ + +s+ + + s Rmu_sc0001526.1_g000046.1 49 DQKDCHSKVYTAKGPRDHRIRLTAHTAIQFYDVQDRLGYDRPSKVVDWDIKKAKAAIDELPPWnlnsisvqT-TSS-PTVPISA 130 689***********************************************************9887776531.222.2223333 PP TCP 79 sssasnsssg 88 ++++n s + Rmu_sc0001526.1_g000046.1 131 AQNTQNASLH 140 3333333333 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence |
MGESHNNLHH RAMTSSSAAS LLGLGIRTAS SSTASEIVEV RGHILRSTDQ KDCHSKVYTA 60 KGPRDHRIRL TAHTAIQFYD VQDRLGYDRP SKVVDWDIKK AKAAIDELPP WNLNSISVQT 120 TSSPTVPISA AQNTQNASLH FSMVEAPSSL SANRRGAMMG SSGVAELVNQ NSSNFLQVRM 180 VWRPKLLIFG EDGVEVVLHV GNDREDGRVG LEL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.2 | 4e-37 | TCP family protein |