PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001441.1_g000008.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 367aa MW: 40473.5 Da PI: 7.1268

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001441.1_g000008.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	97.6	2.3e-30	65	192	2	99
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................... 65 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak i++l+ + Rmu_sc0001441.1_g000008.1 65 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKDDIDQLPPLpmmppapgsygggglmnqqs 148 689*************************************************************88877777777777776666 PP TCP 66 .........................ssssaseceaesssssasnsssg........kaaksaakskk 99 + + ++ ++ s + Rmu_sc0001441.1_g000008.1 149 llniipssldqnigdqgfrsniwrsT---------------------NddekdrenDKDVEE--SDE 192 66555544444433333332222221.....................011111111111111..111 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MIRSPNTNEA DVQGPEGNSS THNEAGKTSR VALSSSISRS STSTTVAPWM RLSKDPRIVR 60 VSRAFGGKDR HSKVCTVRGL RDRRVRLSVP TAIQLYDLQD RLGLNQPSKV VDWLLDAAKD 120 DIDQLPPLPM MPPAPGSYGG GGLMNQQSLL NIIPSSLDQN IGDQGFRSNI WRSTNDDEKD 180 RENDKDVEES DEDDHRQQGG NVVDHGSSSS NNFLMTRSSA TTNHPLFFPG LLNNSNAMPN 240 YGFHNWDHNQ SSNFPLSHQL GSHGLTSQHT DPHNFNVASL PSTLSLSTGT TQAYFPSHAT 300 TNAADHQINI PRQFNLHMQN PHQNLLANSV YPSSQSMQRA TPQNLMSMIT KLAHSSQPNK 360 DQEPPSR

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MIRSPNTNEA DVQGPEGNSS THNEAGKTSR VALSSSISRS STSTTVAPWM RLSKDPRIVR  60
VSRAFGGKDR HSKVCTVRGL RDRRVRLSVP TAIQLYDLQD RLGLNQPSKV VDWLLDAAKD  120
DIDQLPPLPM MPPAPGSYGG GGLMNQQSLL NIIPSSLDQN IGDQGFRSNI WRSTNDDEKD  180
RENDKDVEES DEDDHRQQGG NVVDHGSSSS NNFLMTRSSA TTNHPLFFPG LLNNSNAMPN  240
YGFHNWDHNQ SSNFPLSHQL GSHGLTSQHT DPHNFNVASL PSTLSLSTGT TQAYFPSHAT  300
TNAADHQINI PRQFNLHMQN PHQNLLANSV YPSSQSMQRA TPQNLMSMIT KLAHSSQPNK  360
DQEPPSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02150.1	5e-42	TCP family protein