PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001374.1_g000048.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 178aa MW: 19730.9 Da PI: 10.1491

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001374.1_g000048.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	66.3	1.1e-20	30	106	1	70
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssa 70 a+g+kd+h k++ ++g+Rd vRl a++a++f+ +q++L +d +s +++ L+++ak+a+ el+ + s+ Rmu_sc0001374.1_g000048.1 30 ATGRKDSHNKVCIAKGPRDHHVRLAAHTAIQFYYVQNRLRYDLPSMAVDCLIKKAKAAMEELPPWnpnsifvqtT--SS 106 589************************************************************995555554321..11 PP

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence
MIPELTKLSM TASSSTASEI REARGHILRA TGRKDSHNKV CIAKGPRDHH VRLAAHTAIQ 60 FYYVQNRLRY DLPSMAVDCL IKKAKAAMEE LPPWNPNSIF VQTTSSPTVP ISAAQNASLH 120 FSMVEAPSSL FANRQGAMVD SSGVAELVNQ NSSNFLQVRM VWRPKLMLIF VCLQLPLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	7e-33	TCP family protein