PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001338.1_g000004.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 368aa MW: 41118.1 Da PI: 8.3149

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001338.1_g000004.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108.4	3.6e-34	84	140	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgsefprsYY+Ct+++Cpvkkkvers d++++ei+Y+geHnh+ Rmu_sc0001338.1_g000004.1 84 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPSCPVKKKVERSV-DGQITEIIYKGEHNHQ 140 8**************************************.*************8 PP
2	WRKY	108.1	4.2e-34	254	312	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+a+dpk+v++tYeg+Hnh+ Rmu_sc0001338.1_g000004.1 254 LDDGYRWRKYGQKVVKGNPYPRSYYKCTFQGCNVRKHVERAATDPKAVITTYEGKHNHD 312 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MTHQQALAQV TAQASQSQSY TFHIPNEHST SMTQLPIFTS STTPPQEMPS EIPDSGVTLK 60 ESSDISHLEQ RSQPSSLTVD KPNDDGYNWR KYGQKQVKGS EFPRSYYKCT HPSCPVKKKV 120 ERSVDGQITE IIYKGEHNHQ RPQSKRPKDS GNQNGNVQVN HDLASQVHGG NLNKSKEGTY 180 SMSKQGQESS QAISGTSDSE EVGDAETKVE EKDEDEPAAK RRNMEVRHSE PASSHRTVTE 240 PRIIVQTTSE VDLLDDGYRW RKYGQKVVKG NPYPRSYYKC TFQGCNVRKH VERAATDPKA 300 VITTYEGKHN HDVPASKSGS HYAANNNASN LRSGNPGTEK HASVSKMDPQ NNDQQPVARL 360 RLKEEQIT

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MTHQQALAQV TAQASQSQSY TFHIPNEHST SMTQLPIFTS STTPPQEMPS EIPDSGVTLK  60
ESSDISHLEQ RSQPSSLTVD KPNDDGYNWR KYGQKQVKGS EFPRSYYKCT HPSCPVKKKV  120
ERSVDGQITE IIYKGEHNHQ RPQSKRPKDS GNQNGNVQVN HDLASQVHGG NLNKSKEGTY  180
SMSKQGQESS QAISGTSDSE EVGDAETKVE EKDEDEPAAK RRNMEVRHSE PASSHRTVTE  240
PRIIVQTTSE VDLLDDGYRW RKYGQKVVKG NPYPRSYYKC TFQGCNVRKH VERAATDPKA  300
VITTYEGKHN HDVPASKSGS HYAANNNASN LRSGNPGTEK HASVSKMDPQ NNDQQPVARL  360
RLKEEQIT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03340.1	1e-138	WRKY family protein