PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001329.1_g000016.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

G2-like

Protein Properties

Length: 392aa MW: 43735.2 Da PI: 6.9836

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001329.1_g000016.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107	1.1e-33	29	83	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG+ekAtPkt+++lm+++gLtl+h+kSHLQkYRl Rmu_sc0001329.1_g000016.1 29 KPRLKWTPDLHERFIEAVNQLGGAEKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 83 79****************************************************8 PP
2	Myb_DNA-binding	65.9	7.3e-21	31	82	1	48
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 r++WT++++e++++av+qlGg t+kt+++ mg g+tl+++ks++qky+ Rmu_sc0001329.1_g000016.1 31 RLKWTPDLHERFIEAVNQLGGAekaTPKTVMKLMGiPGLTLYHLKSHLQKYR 82 89****************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MAIPPERHLF LQPETCPEDS GLVLSTDAKP RLKWTPDLHE RFIEAVNQLG GAEKATPKTV 60 MKLMGIPGLT LYHLKSHLQK YRLSKNLHVH ANSGTTNKIG AVAAAVPGER ISEVNGTHMN 120 SMNIGPQSNK GLHINETLQM QIEVQRRLHE QLEVQRHLQL RIEAQGKYLQ SVLEKAQETL 180 GRQNLGTVGL EAAKVQLSEL VSKVSTQCLN SAFTELKEIQ GSCPQNQPTD CSVDSCLTSC 240 EGSKKDQEIQ NNSRMGLRAY NSSRVLMESE ETILHLKENN MFVSALSKNA DQRMFPSEAR 300 SGDLSVSIGL EREKWNRSNC NSEERFKARN TDDSFLEHTN NKADSVKVDQ TQKVSQGYSV 360 PYFAAKLDLN SHDDIDASSS CKQFDLNGFS WS

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MAIPPERHLF LQPETCPEDS GLVLSTDAKP RLKWTPDLHE RFIEAVNQLG GAEKATPKTV  60
MKLMGIPGLT LYHLKSHLQK YRLSKNLHVH ANSGTTNKIG AVAAAVPGER ISEVNGTHMN  120
SMNIGPQSNK GLHINETLQM QIEVQRRLHE QLEVQRHLQL RIEAQGKYLQ SVLEKAQETL  180
GRQNLGTVGL EAAKVQLSEL VSKVSTQCLN SAFTELKEIQ GSCPQNQPTD CSVDSCLTSC  240
EGSKKDQEIQ NNSRMGLRAY NSSRVLMESE ETILHLKENN MFVSALSKNA DQRMFPSEAR  300
SGDLSVSIGL EREKWNRSNC NSEERFKARN TDDSFLEHTN NKADSVKVDQ TQKVSQGYSV  360
PYFAAKLDLN SHDDIDASSS CKQFDLNGFS WS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-133	G2-like family protein