PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001322.1_g000021.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 424aa    MW: 46107.9 Da    PI: 8.2195
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001322.1_g000021.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.67.5e-12427226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                               kte+Cr+f+r G C+yGd+C++ H+
  Rmu_sc0001322.1_g000021.1  4 KTEPCRYFQR-GSCQYGDKCRYLHV 27
                               8*********.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    
MPVKTEPCRY FQRGSCQYGD KCRYLHVTQQ QPKSNIFGGS QSGSYQHQKS NPYGFGVHNN  60
SQSKAGTDKP FENKWTRSSS AAATATPSSR RSDNQPQTTN HECTNPESCR SIINEDFERE  120
RPLWKLTCYG HSRNSPCDIV GDVSYEELRA LAYDDAKRGL NLPSIIERER NLVNTKSIEF  180
ENLRKPSAVP LNSTVSQSPF ASATANAFLQ TPQSSAPPSV SSFSQFGTSL NVGFGQRPSA  240
PANNGFFQPS LFMNSSHASS GFGTNNIPSA NVGSLASQSH NSTRGSIFTH NVGFGNTDVM  300
RPDSNQISSS AVPSQFPSAT SSQPLIVSDG PGSASILSGQ VTAEAQSLNN IQREKISGDM  360
SIWLKKKWTP GEVPEEEPPD ALVQIDLTCP GFHHEIRSGL VGSTLEITLP RTGRVTPKVD  420
YLKH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.24e-60C3H family protein