PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001308.1_g000032.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 487aa MW: 55725.5 Da PI: 6.7248

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001308.1_g000032.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00045	425	443	3	21
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C+ Cg+ F++ ++++rH++ Rmu_sc0001308.1_g000032.1 425 CKSCGRYFPDIELFNRHLS 443 *****************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MEAEADWVST KSLYICSMEM YRDESVFTQC YSIQAIDLTD LLSFSDTPIT ISFSRSPPTK 60 AMGSPPTKVQ DDILREVDFL QGNDVPYDMG FGVFGSQIVL AGGLQLPQRH RTTSKVYVLD 120 TLRDKPKFVK RKANKPKRRD HRIPEFQSPK RLPQLMEIEG KLYALDLRPQ QGFPSSSSFE 180 VFDPQTGSWA ALPDHPPPII QYRGPLSCAV VGTKFLISAC DTPVYCFDVA EPTRPWNELC 240 VRYDRHKLYN YIDPRALPFL QVLVLDLEEE NHKILFSSCG NDILVFHMNL SNDLALELIA 300 TIEVDINFDD CSVSFIHLGG QKVCFVFLDW WIFDKMRGVF FTFEYSFSKS AASPDTHTSS 360 CGDDPYFRVF YPSNSKGRSF SAKTLGWRTF EYHYWSEEAS PISTDVCGSA VLPLHHRHRE 420 ERAICKSCGR YFPDIELFNR HLSINPCCRS EQRLIQCKFC GCYFSKQELF AHFSTSVSCK 480 SKFTGNI

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MEAEADWVST KSLYICSMEM YRDESVFTQC YSIQAIDLTD LLSFSDTPIT ISFSRSPPTK  60
AMGSPPTKVQ DDILREVDFL QGNDVPYDMG FGVFGSQIVL AGGLQLPQRH RTTSKVYVLD  120
TLRDKPKFVK RKANKPKRRD HRIPEFQSPK RLPQLMEIEG KLYALDLRPQ QGFPSSSSFE  180
VFDPQTGSWA ALPDHPPPII QYRGPLSCAV VGTKFLISAC DTPVYCFDVA EPTRPWNELC  240
VRYDRHKLYN YIDPRALPFL QVLVLDLEEE NHKILFSSCG NDILVFHMNL SNDLALELIA  300
TIEVDINFDD CSVSFIHLGG QKVCFVFLDW WIFDKMRGVF FTFEYSFSKS AASPDTHTSS  360
CGDDPYFRVF YPSNSKGRSF SAKTLGWRTF EYHYWSEEAS PISTDVCGSA VLPLHHRHRE  420
ERAICKSCGR YFPDIELFNR HLSINPCCRS EQRLIQCKFC GCYFSKQELF AHFSTSVSCK  480
SKFTGNI