PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001301.1_g000075.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 411aa MW: 46179.7 Da PI: 8.0041

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001301.1_g000075.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.8e-05	136	157	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg s + +++Lk+H+++H Rmu_sc0001301.1_g000075.1 136 TCEECGASVKKPEYLKQHMQSH 157 6*******************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MLGVDRPRRV LTDPNLMLNE RRLDIFGSKF VDGINERKRE RSHEHDALHG GEHHWRHRQA 60 QRDRHLVWRG LVPRPLSKGV NQQGLRHLIR SASPHHRHLL RHRSLHFCQG LVWTIKFDEM 120 EMAKASEEVV VENSNTCEEC GASVKKPEYL KQHMQSHSLE GFFVNVGPLK DFSYGLRINA 180 DANATGIAKQ SNYELVCCSG HGNNGSLCVL CQSIHPEMIT EVALPGCKGI WTIYHKSACG 240 HNAESSDDEY HAFLIISLEA RTMKYDADQA AKATGATVLG IQVGCGFRNE ENRLTLPDPA 300 FPANCDSLLR RNFPDRIVSS VWSSLWCPLG GAVGCFRTRS VLRSPTSVGL QVELGELRAA 360 SLIDPWWLFG SIYVKLGSTQ IGLLFTASEV VFDPLCLFSN FELVMRIHKH A

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MLGVDRPRRV LTDPNLMLNE RRLDIFGSKF VDGINERKRE RSHEHDALHG GEHHWRHRQA  60
QRDRHLVWRG LVPRPLSKGV NQQGLRHLIR SASPHHRHLL RHRSLHFCQG LVWTIKFDEM  120
EMAKASEEVV VENSNTCEEC GASVKKPEYL KQHMQSHSLE GFFVNVGPLK DFSYGLRINA  180
DANATGIAKQ SNYELVCCSG HGNNGSLCVL CQSIHPEMIT EVALPGCKGI WTIYHKSACG  240
HNAESSDDEY HAFLIISLEA RTMKYDADQA AKATGATVLG IQVGCGFRNE ENRLTLPDPA  300
FPANCDSLLR RNFPDRIVSS VWSSLWCPLG GAVGCFRTRS VLRSPTSVGL QVELGELRAA  360
SLIDPWWLFG SIYVKLGSTQ IGLLFTASEV VFDPLCLFSN FELVMRIHKH A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	2e-07	C2H2 family protein