PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001299.1_g000020.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CPP

Protein Properties

Length: 927aa MW: 100947 Da PI: 6.2144

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001299.1_g000020.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	41.4	2.9e-13	677	714	1	38
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkN 38 ++k+gCnCkkskClkkYCeCf+a++ Cs C+C+ C+N Rmu_sc0001299.1_g000020.1 677 RHKRGCNCKKSKCLKKYCECFQANVGCSGACRCDCCQN 714 589**********************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 927 aa Download sequence
MDGSPETNRV AAAAASSPAQ ASSPAVQVTI RFLISKCAVN AVVLESPFSN FLSNLTPINT 60 VKSDSYSQRL VGAFFPTPPV VFTSPHIDLE RETSFLERND IVEAGYKECN TTIFQNPSFE 120 KEVQLCSASG CIDEYLADPA KVDCTGSADI QSSINAGKES NTEVHEVIDG STKSEPLPTL 180 NQAEVGLPLP SLTQIETTII EKVDKNSVDL VTRAQSRGQN TAKESPFSNF LSNLTPINTV 240 KSDSYSQRLV GAFFPTPPVV FTSPHIDLER ETSFLERNDI VEAGYKECNT TIFQNPSFEK 300 EVQLCSASGC IDEYLADPAK VDCTGSADIQ SSINAGKESN TEVHEVIDGS TKSEPLPTLN 360 QAEVGLPLPS LTQIETTIIE KVDKNSVDLV TRAQSRGQNT AKEVSQHHRG IRRHLQFETA 420 VAQKSSNFGN HRSLCSLTHD TDNLRSQSKL TNLKTLASSH LDSKAFSSPQ GVSCDTSQLS 480 SCLCESVRSS QIGGNSSTSA PIRSGIGLHL NSITRSTSMS SDVLLSRKAT GCLSTPDQML 540 EHDNRNNIEH ESSSSFISVV LGQNYSSVGN DQQESQTAAH TTFTFYSTDG VPYLPCDSMH 600 QILVDQHSVP SGVFCLDSCA CENCYNKPEF EDTVFDARQQ IESRNPLAFA PKVVKHEINS 660 SPNIMEEADW TTPSSARHKR GCNCKKSKCL KKYCECFQAN VGCSGACRCD CCQNPCGTKA 720 DHEYNRAEKW ETHPAEKLDT IKGGNDCIKA LDMDPYSPWE GLSVISNLTP LSNPCSSTRV 780 SSASSSMRNR TKISQAQLQS SRLQPSGTGH LKRGRSPVIF TPQVFESKGP SQLSSDGASY 840 ERMDDDIPEL LKEPSIPPKV VKGSPNQKRV SPPQSRAEKL RSRSPKGLRS GRKFILQAMP 900 SFPPLSPYSD SKAINDTRND HKGTQNN

Sequence ? help Back to Top

Protein Sequence Length: 927 aa Download sequence

MDGSPETNRV AAAAASSPAQ ASSPAVQVTI RFLISKCAVN AVVLESPFSN FLSNLTPINT  60
VKSDSYSQRL VGAFFPTPPV VFTSPHIDLE RETSFLERND IVEAGYKECN TTIFQNPSFE  120
KEVQLCSASG CIDEYLADPA KVDCTGSADI QSSINAGKES NTEVHEVIDG STKSEPLPTL  180
NQAEVGLPLP SLTQIETTII EKVDKNSVDL VTRAQSRGQN TAKESPFSNF LSNLTPINTV  240
KSDSYSQRLV GAFFPTPPVV FTSPHIDLER ETSFLERNDI VEAGYKECNT TIFQNPSFEK  300
EVQLCSASGC IDEYLADPAK VDCTGSADIQ SSINAGKESN TEVHEVIDGS TKSEPLPTLN  360
QAEVGLPLPS LTQIETTIIE KVDKNSVDLV TRAQSRGQNT AKEVSQHHRG IRRHLQFETA  420
VAQKSSNFGN HRSLCSLTHD TDNLRSQSKL TNLKTLASSH LDSKAFSSPQ GVSCDTSQLS  480
SCLCESVRSS QIGGNSSTSA PIRSGIGLHL NSITRSTSMS SDVLLSRKAT GCLSTPDQML  540
EHDNRNNIEH ESSSSFISVV LGQNYSSVGN DQQESQTAAH TTFTFYSTDG VPYLPCDSMH  600
QILVDQHSVP SGVFCLDSCA CENCYNKPEF EDTVFDARQQ IESRNPLAFA PKVVKHEINS  660
SPNIMEEADW TTPSSARHKR GCNCKKSKCL KKYCECFQAN VGCSGACRCD CCQNPCGTKA  720
DHEYNRAEKW ETHPAEKLDT IKGGNDCIKA LDMDPYSPWE GLSVISNLTP LSNPCSSTRV  780
SSASSSMRNR TKISQAQLQS SRLQPSGTGH LKRGRSPVIF TPQVFESKGP SQLSSDGASY  840
ERMDDDIPEL LKEPSIPPKV VKGSPNQKRV SPPQSRAEKL RSRSPKGLRS GRKFILQAMP  900
SFPPLSPYSD SKAINDTRND HKGTQNN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	3e-43	CPP family protein