PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001298.1_g000029.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

AP2

Protein Properties

Length: 627aa MW: 69074.4 Da PI: 7.2258

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001298.1_g000029.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.2	1.5e-11	258	314	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + ++ ++ k + g ++ +e Aaka++ a++k++g Rmu_sc0001298.1_g000029.1 258 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEERAAKAYDLAALKYWG 314 78*****************433.44555535555.779999************98 PP
2	AP2	33.9	8.1e-11	377	421	8	55
AP2 8 wdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Rmu_sc0001298.1_g000029.1 377 RHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 421 57889****988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 627 aa Download sequence
MSNWLGFSLT PHLRIHEGFD GREEDQQEQD HGVVGFPPHM SVMPLRSDGS LCFAADPFRR 60 PNGSEDWRSY ENSMVGATSV TNPVDDDEEG PKLEDFLGSC YSNSPPGDET KVYCQNQEDS 120 KINVNEAPNF SNPNSEIEAN STDPSHHQSL IQPYSHYYAN PQSGGALVPC TNGMYKSWLG 180 QTVVVPYADV KSPSDQENGS NNFQSNLSLT MSPTLQNGGM LPISQVQMVE SKKRPGGKSS 240 AREPVTRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CRKEGQTRKG RQGGYDKEER 300 AAKAYDLAAL KYWGPTTHIN FPISTYVKEL EEMKTMTRQE FVANLRRKSS GFSRGASVYR 360 GVTSTYLKPH QSSIFLRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR 420 GTSAVTNFDM SRYDVKRICS SSTLITSDLA KRPSPKDPAP AAPNDQEFNS CASSTSSQPL 480 LAITNSEEPC DENLAEMVWN DNPNSEANTV TLAAASGSRN SSCPQSPKCC EFGSNSEFGL 540 SVGDYSHAYF SSLQGAKYED GNGGSDHSRL GNLGLVQQNC ILKIEGSGSA LCRSKGLAGS 600 VGRLRILLSV VHIKGVGRRR WSAVVRD

Sequence ? help Back to Top

Protein Sequence Length: 627 aa Download sequence

MSNWLGFSLT PHLRIHEGFD GREEDQQEQD HGVVGFPPHM SVMPLRSDGS LCFAADPFRR  60
PNGSEDWRSY ENSMVGATSV TNPVDDDEEG PKLEDFLGSC YSNSPPGDET KVYCQNQEDS  120
KINVNEAPNF SNPNSEIEAN STDPSHHQSL IQPYSHYYAN PQSGGALVPC TNGMYKSWLG  180
QTVVVPYADV KSPSDQENGS NNFQSNLSLT MSPTLQNGGM LPISQVQMVE SKKRPGGKSS  240
AREPVTRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CRKEGQTRKG RQGGYDKEER  300
AAKAYDLAAL KYWGPTTHIN FPISTYVKEL EEMKTMTRQE FVANLRRKSS GFSRGASVYR  360
GVTSTYLKPH QSSIFLRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR  420
GTSAVTNFDM SRYDVKRICS SSTLITSDLA KRPSPKDPAP AAPNDQEFNS CASSTSSQPL  480
LAITNSEEPC DENLAEMVWN DNPNSEANTV TLAAASGSRN SSCPQSPKCC EFGSNSEFGL  540
SVGDYSHAYF SSLQGAKYED GNGGSDHSRL GNLGLVQQNC ILKIEGSGSA LCRSKGLAGS  600
VGRLRILLSV VHIKGVGRRR WSAVVRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-112	AP2 family protein