PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001289.1_g000014.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 1187aa    MW: 134967 Da    PI: 8.9115
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001289.1_g000014.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.88.2e-138909424399
                                S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                         B3  43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                 ++W v++  +k +g+++++kGWk+Fv+ ngLk g+f+vF++ g+s+f  +v ++ +
  Rmu_sc0001289.1_g000014.1 890 AKTWLVNV--EKIDGKFFFRKGWKKFVNGNGLKLGEFLVFRYFGNSKF--FVDIYGR 942
                                499*****..**********************************9999..9988765 PP
2B346.56.7e-1510991182795
                                 .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                         B3    7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88  
                                 + ++   g + +p  fa+ +  k  ++ ++tl+  +g++W+v+l+y+++ +r  lt+GW +Fv+an+L++g  +vF l++ +
  Rmu_sc0001289.1_g000014.1 1099 HISYVHAGYMNVPSAFAKGYLTK--RPSEVTLQV-NGETWSVNLQYERNMKR--LTTGWADFVRANKLEVGNACVFVLSNYD 1175
                                 44444556699******999645..455788665.99*******88888777..9**********************98768 PP

                                 EE..EEE CS
                         B3   89 efelvvk 95  
                                 +f + v 
  Rmu_sc0001289.1_g000014.1 1176 KFIFDVI 1182
                                 8855555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1187 aa     Download sequence    
MASPAIDLLI GKIVSFLESE VSLLEGVHDE LHEVKLELLT MKAFLEDAER KGALSEVEKT  60
WVANVRDVSI DVEDIIDEFT YDTNKRRSWG PFTRAFWKTL CLPQNIWERH RIATKLQTII  120
KTIKDIPERN RRYGSVRIEG SNSHHDVNRI KVYGESSLFL KDDDLVGITD ARRKLVGWLL  180
SSHSQRTVIS VVGMGGSGKT TLVASTFNNQ TVQKHFGCYT WITVSQSYTV EDLFRVMINE  240
LLAAAQMDVP QNLSNMSYRH LVEMLVHYLQ PRRYMIVLDD VWDTNLWRSI DVALPNGTHG  300
SRIMLTTRNK DIASLAFGVE SHVHQVEPLN TNEAWDLFSR RAFSGGSDKS CPPELQIIAR  360
ELVGKCEGLP LGLVALGSLM STKRFVSEWK KVYNSMSWEL SNNPTLEVVK SILLLSFNDL  420
PYRLKHCFLY FCIFPEDYTI KCKRLVRLWI AEGFVEQVRG GQPEEIAESY LAELTCRCML  480
QVVEREPSGK AKKFKMHDLL RELAISISEA EKFCTVYNEK ETNEERRAPR RLSIQGSSGK  540
VRAHKDMTKV RSLFVFAPKM MASSSSLEKV LPSGFKLLRV LDLKYVPIQE LPDEIMKCFN  600
LKSLNLKGTE VRKLPKRIGN LQNLETMDIR DSNIRELPVG IVKLQKLRHL FMYHFNYGAY  660
KSFNSFQGTK APAGICKLQS LQILDSIEAG SELIKQLQHM TQLTALGLAN VKEADEIDLC  720
KSIESMKLME CLTVKTSSED EVLRMDALLS APPLLKTLVL TGKLNKVPLW FASLESLTVL  780
YLHWSRSTED FLPHIHALPN LTKLWLCNAY VGNQLLFQTG FQKLSGLYIT NFPQLNLITI  840
EKGVMPALKT LDISECMELK RLPRGIKLLT CLQKLHLHRG PQQTHLRTLA KTWLVNVEKI  900
DGKFFFRKGW KKFVNGNGLK LGEFLVFRYF GNSKFFVDIY GRNTCKKDFV KAVEKSEKEG  960
HGNEGYQGLK GVAEGTRTGQ ATNSIHIKDE VIDTESERSL HPLTRNTGKD VALERANAFK  1020
IEDEEKQGND DEDEDDDDSI RIPNDLPPCT KTMEKSPLRA QLVKRRQSSS STNTGGKDVA  1080
LQKANAFKSA DPSFVVAMHI SYVHAGYMNV PSAFAKGYLT KRPSEVTLQV NGETWSVNLQ  1140
YERNMKRLTT GWADFVRANK LEVGNACVFV LSNYDKFIFD VIVYRAK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.19e-13B3 family protein