PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001258.1_g000009.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 361aa MW: 40844.1 Da PI: 10.4338

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001258.1_g000009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	86.6	5.7e-27	200	272	1	66
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......s 66 a+g+kdr sk++T++g++d RvRlsa++ ++f+d+qd+LG+d++ +WL+++ak+ai+el+ + Rmu_sc0001258.1_g000009.1 200 ATGRKDRYSKVCTAKGPKDHRVRLSAHTSIQFYDVQDRLGYDRPNMVADWLIKKAKAAIDELPPWnpnsisvQ 272 589***********************************************************99844444431 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
LTRPEPGDPT LSELTAPATS SGETSPVQFS SLLRSSLWWS LAAVLLHEGA ARRHRLRKSD 60 PTGKRISDDV KVSGFHLWLR GSRLNRSMVY LTKYLDGYLA DWPLCSLLKT QREFEVADGD 120 LDVDFMIRRS LKSYVTNGDR SQMRTHHRIC KKKNGGERQQ PLPLLNDVIL LSFLIGFGDK 180 DCFFLHRKRN REARGHILRA TGRKDRYSKV CTAKGPKDHR VRLSAHTSIQ FYDVQDRLGY 240 DRPNMVADWL IKKAKAAIDE LPPWNPNSIS VQTISSPMVP ISPPQDMQNA SLHFSMVEAP 300 SSLFANQRGA MVGSSGVVEL VNQNSLNFLQ VRMVWRPKLM LIFVCLQLPL IKVRLEAEVA 360 G

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

LTRPEPGDPT LSELTAPATS SGETSPVQFS SLLRSSLWWS LAAVLLHEGA ARRHRLRKSD  60
PTGKRISDDV KVSGFHLWLR GSRLNRSMVY LTKYLDGYLA DWPLCSLLKT QREFEVADGD  120
LDVDFMIRRS LKSYVTNGDR SQMRTHHRIC KKKNGGERQQ PLPLLNDVIL LSFLIGFGDK  180
DCFFLHRKRN REARGHILRA TGRKDRYSKV CTAKGPKDHR VRLSAHTSIQ FYDVQDRLGY  240
DRPNMVADWL IKKAKAAIDE LPPWNPNSIS VQTISSPMVP ISPPQDMQNA SLHFSMVEAP  300
SSLFANQRGA MVGSSGVVEL VNQNSLNFLQ VRMVWRPKLM LIFVCLQLPL IKVRLEAEVA  360
G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	52	58	RRHRLRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15030.2	8e-36	TCP family protein