PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0001232.1_g000017.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB_related | ||||||||
Protein Properties | Length: 100aa MW: 12160 Da PI: 10.0605 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.5 | 7.2e-09 | 30 | 69 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++E++l+++ ++ G + W++Ia +++ gRt+ ++ +w Rmu_sc0001232.1_g000017.1 30 MSEQEEDLIYRMYRLVGER-WDLIAGRVP-GRTAVELERFWI 69 589****************.*********.********9995 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 100 aa Download sequence |
MDRCRRKRPK ITTSDQSEEV VSSEWEFIHM SEQEEDLIYR MYRLVGERWD LIAGRVPGRT 60 AVELERFWIM RHCEVFAEKR RKHKKENSKI VPRRTFSGFG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53200.1 | 2e-35 | MYB_related family protein |