PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001214.1_g000051.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 437aa MW: 49615.7 Da PI: 6.5982

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001214.1_g000051.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.4	5.5e-30	114	199	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +++g++rs k+Ckek+enl k+ykk+keg+ +r ++ +++++f+ Rmu_sc0001214.1_g000051.1 114 RWPRQETLTLLEIRSSLDSKFKETNQKGPLWDEVSRIMsEDHGYHRSGKKCKEKFENLYKYYKKTKEGKAGR--QDGKHYRFFR 195 8***********************************888*************************98..55667* PP trihelix 84 qlea 87 qlea Rmu_sc0001214.1_g000051.1 196 QLEA 199 85 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MDDYPDLRQL MASRTQQLVQ FPDPFSVRPY NNFHPNSIVV GHEVNAHEFF EFGSSASAAG 60 APPNFSTIIS NSSVAGNLNG STAASSVGSL YGLELMNQHA WSINGNDGSG NNSRWPRQET 120 LTLLEIRSSL DSKFKETNQK GPLWDEVSRI MSEDHGYHRS GKKCKEKFEN LYKYYKKTKE 180 GKAGRQDGKH YRFFRQLEAI YGDQSTTNPL SSASDQTHLT GTLNPTLLYN HTTATINQEN 240 QEVKLGAESL SFSNNSTDLE TSSSENNGDD LSNSANDHSK NENKIRCSRR MKKTWKTQVE 300 EFVNSQMMKV MKAQEGWMEK MLKTIEGREE ERLAKEEEWR KREVERFNQQ VHEFWANERA 360 WVETRDASIM EALSQIRGIG TNSYNTKAKD ESMGLQLTDA GLLSSSSNYM NMNSTSFYIP 420 TNEGENLWNR YGGKLSK

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MDDYPDLRQL MASRTQQLVQ FPDPFSVRPY NNFHPNSIVV GHEVNAHEFF EFGSSASAAG  60
APPNFSTIIS NSSVAGNLNG STAASSVGSL YGLELMNQHA WSINGNDGSG NNSRWPRQET  120
LTLLEIRSSL DSKFKETNQK GPLWDEVSRI MSEDHGYHRS GKKCKEKFEN LYKYYKKTKE  180
GKAGRQDGKH YRFFRQLEAI YGDQSTTNPL SSASDQTHLT GTLNPTLLYN HTTATINQEN  240
QEVKLGAESL SFSNNSTDLE TSSSENNGDD LSNSANDHSK NENKIRCSRR MKKTWKTQVE  300
EFVNSQMMKV MKAQEGWMEK MLKTIEGREE ERLAKEEEWR KREVERFNQQ VHEFWANERA  360
WVETRDASIM EALSQIRGIG TNSYNTKAKD ESMGLQLTDA GLLSSSSNYM NMNSTSFYIP  420
TNEGENLWNR YGGKLSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	9e-72	Trihelix family protein