PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001208.1_g000043.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 415aa MW: 45919 Da PI: 5.9124

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001208.1_g000043.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	1e-16	55	99	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W++I ++g +t+ q++s+ qk+ Rmu_sc0001208.1_g000043.1 55 RERWTEEEHNKFLEALKLHGRA-WRKIQDHVG-SKTAVQIRSHAQKF 99 78****************88.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MASPAMAPVQ DDDDDQYGEI SFSPAAVGVQ LKDQLSSGND YAPKVRKPYT ITKQRERWTE 60 EEHNKFLEAL KLHGRAWRKI QDHVGSKTAV QIRSHAQKFF SKVARDPDGI NTSSADPIDI 120 PPPRPKRKPM RPYPRKHVHP LHTETSNLEQ PIRSAPKKLS VSEIENQSPT SVLSPMGSDT 180 IGSSDSSTPS GSLSPVSLKL ELFPTDNVYD SGGSADEASA RSLKLFGRTV LVTDSHRPLS 240 GGTCKSISYD TQEEKCGQTS IPYNFMPIQC AFGNVEHVWN RHQLIHFPQC QNENWNRSGS 300 SNLIPWCTLG ADSSVPFLPF SNQQTMKSYF DCNLEDPHDK DVQKESSWNG SDAGSVSDEE 360 NGGKCLDVEM HGDLQISEKE KVEEPNSMLG TQLQVKTGIR KESTFVSSCD TVEGP

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MASPAMAPVQ DDDDDQYGEI SFSPAAVGVQ LKDQLSSGND YAPKVRKPYT ITKQRERWTE  60
EEHNKFLEAL KLHGRAWRKI QDHVGSKTAV QIRSHAQKFF SKVARDPDGI NTSSADPIDI  120
PPPRPKRKPM RPYPRKHVHP LHTETSNLEQ PIRSAPKKLS VSEIENQSPT SVLSPMGSDT  180
IGSSDSSTPS GSLSPVSLKL ELFPTDNVYD SGGSADEASA RSLKLFGRTV LVTDSHRPLS  240
GGTCKSISYD TQEEKCGQTS IPYNFMPIQC AFGNVEHVWN RHQLIHFPQC QNENWNRSGS  300
SNLIPWCTLG ADSSVPFLPF SNQQTMKSYF DCNLEDPHDK DVQKESSWNG SDAGSVSDEE  360
NGGKCLDVEM HGDLQISEKE KVEEPNSMLG TQLQVKTGIR KESTFVSSCD TVEGP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17300.1	8e-51	MYB_related family protein