PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0001208.1_g000034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 87aa MW: 10309.6 Da PI: 6.2444 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 40.7 | 7.5e-13 | 4 | 85 | 2 | 77 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikev.d.iykvePwdLp.k..kvkaeek.ewyfFskrdkkyatgkrknra 77 p G+ FhPtdeelv ++L+++++ + ++ i+e + ++ ePw k + +++ + fF+k +k +++gkr r+ Rmu_sc0001208.1_g000034.1 4 PIGYMFHPTDEELVGYFLQHRARMGNQFHSNEISEYsEfYCQEEPWVVWdKngGSSVDDRePLLFFTKLKKLNPNGKRFDRK 85 89*******************98877444466888843366779****6333422224442669**************9996 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 87 aa Download sequence |
MGYPIGYMFH PTDEELVGYF LQHRARMGNQ FHSNEISEYS EFYCQEEPWV VWDKNGGSSV 60 DDREPLLFFT KLKKLNPNGK RFDRKVG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G24590.2 | 2e-09 | NAC family protein |