PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001206.1_g000039.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 339aa    MW: 38550.1 Da    PI: 6.7853
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001206.1_g000039.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.16.6e-57161421129
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrFhPtdeel+++yL +kv ++ +++ ++i evd++k+ePwdLp ++k +ekewyfF+ rd+ky+tg r+nrat++gyWk
  Rmu_sc0001206.1_g000039.1  16 LPPGFRFHPTDEELISHYLSPKVLDSGFTA-RAIGEVDLNKCEPWDLPWRAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWK 98 
                                79*************************999.89***************888999****************************** PP

                        NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                atgkdke+++  ++lvg+kktLvfykgrapkgekt+Wvmheyrle
  Rmu_sc0001206.1_g000039.1  99 ATGKDKEIYK-AKALVGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 142
                                **********.999*****************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MENVSAFINE DEQMELPPGF RFHPTDEELI SHYLSPKVLD SGFTARAIGE VDLNKCEPWD  60
LPWRAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIYKAK ALVGMKKTLV  120
FYKGRAPKGE KTNWVMHEYR LEGKYSAYNL PKTAKNEWVI CRIFQKCSGG KKTHISGLVR  180
ESPFGNEFRP SFLPPLMDSP PYNNSDTRTT TVGETSHVSC FSDAMEDQKT QDDIIDSFNN  240
NNNISSSSNN NNNSHLLASS SSFPFKPSVQ NSYFSDQIAP NTGNMQYPDS GFMQDQSIMR  300
LLTEPQAPSL RRSSSNYLGG QDVPSYSAAP IEFDSIWNY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-125NAC family protein