PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001190.1_g000018.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

ERF

Protein Properties

Length: 428aa MW: 47438.9 Da PI: 7.0681

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001190.1_g000018.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	54.8	2.3e-17	52	101	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a++ ++g Rmu_sc0001190.1_g000018.1 52 RYRGVRRRP-WGRYAAEIRDP-----HskERRWLGTFDTAEEAACAYDYAARTMRG 101 59*****.******6.....335999*******************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MEEAFRKLNG FTPTSQPDPI PVPSKKSTAN ASTTTNKRTL KDAPAGSAST MRYRGVRRRP 60 WGRYAAEIRD PHSKERRWLG TFDTAEEAAC AYDYAARTMR GVKARTNFVY PATTHDHLVP 120 AFTFHHPKQS QPSFKNQSNA RGYGQYVPNW PPFATYPNDF SGSGSDRSGT TTNTANSSAA 180 SLNMLFLRNF INSSSPSQNS SSVVSPNPPH SQAQCFSQNQ FQYTNGSSSS PNFSSGGCSS 240 FVNNNTTTSG TTTSHGRSSS SLMMNSTSSG CATHHELPVM ESSKKATTTA TSFVDSDFFP 300 VESSDTGLLE EVIHQFFPKP FSKESNPPKS VEYYTPTSFN STLEVKEEQQ PHVCPVDFDY 360 QQQQQHQQHQ QLGSFNGVQE VAEETVPFYN DLPVNFQMNS ADHSMVVMDH SMFQQYYYPE 420 FVGSLQNA

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MEEAFRKLNG FTPTSQPDPI PVPSKKSTAN ASTTTNKRTL KDAPAGSAST MRYRGVRRRP  60
WGRYAAEIRD PHSKERRWLG TFDTAEEAAC AYDYAARTMR GVKARTNFVY PATTHDHLVP  120
AFTFHHPKQS QPSFKNQSNA RGYGQYVPNW PPFATYPNDF SGSGSDRSGT TTNTANSSAA  180
SLNMLFLRNF INSSSPSQNS SSVVSPNPPH SQAQCFSQNQ FQYTNGSSSS PNFSSGGCSS  240
FVNNNTTTSG TTTSHGRSSS SLMMNSTSSG CATHHELPVM ESSKKATTTA TSFVDSDFFP  300
VESSDTGLLE EVIHQFFPKP FSKESNPPKS VEYYTPTSFN STLEVKEEQQ PHVCPVDFDY  360
QQQQQHQQHQ QLGSFNGVQE VAEETVPFYN DLPVNFQMNS ADHSMVVMDH SMFQQYYYPE  420
FVGSLQNA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G24590.1	8e-15	ERF family protein