PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0001104.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 510aa MW: 56637.4 Da PI: 6.2074

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0001104.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00063	54	74	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F + L H+r+H Rmu_sc0001104.1_g000006.1 54 CHICHKGFESGKALGGHMRMH 74 ********************9 PP
2	zf-C2H2	15	7.3e-05	116	134	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 Cgk F++k +L H+r+H Rmu_sc0001104.1_g000006.1 116 ECGKIFPSKKSLYGHMRSH 134 7*****************9 PP
3	zf-C2H2	12.7	0.0004	370	392	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ksF ++ L H+++H Rmu_sc0001104.1_g000006.1 370 YPCSLCNKSFQSHQALGGHMSSH 392 99*******************99 PP
4	zf-C2H2	13.9	0.00016	438	460	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+++F++ L H+r+H Rmu_sc0001104.1_g000006.1 438 HQCRFCNRTFPTGQALGGHMRSH 460 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MDMEHQEITN PEITESNNNG GGLLIKLKMA KAEPFLEQGN RKPENLAPQF TKICHICHKG 60 FESGKALGGH MRMHVQESKG LIKSSSKSPK PVVVKNSATE FSTSTTDSSG EPVCIECGKI 120 FPSKKSLYGH MRSHPDRPYR GIEPPQSTKN SSTSTLSDAL PQNNHKAAED QQIDSAGTAR 180 IWFGPNPKVV PDLVKIVPSW SQTAKRGTKG TSLSETNSET DDDCDDDDDD ELDLSEAVHD 240 LMMLAQANPK GAEEATNSNF MTKNEDRDGK DRTVIDYVGV AKKRKQKLEI EEDGDFVSGF 300 DLRKSRNHLE LGVDLKEDSE EELSDSENSE SIVLANMMRR KKRRKMKLED LEGAVVAQDH 360 QHQSHHHKVY PCSLCNKSFQ SHQALGGHMS SHNKFKNNIQ YPVEHDHHKQ SGSDDTNNGN 420 ANLTNAATQV DHDQAESHQC RFCNRTFPTG QALGGHMRSH WTGPNDPAQS SQTRRKGLDI 480 DLNELPPMEY EQGIDYSGDG YATSSYNSVT

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MDMEHQEITN PEITESNNNG GGLLIKLKMA KAEPFLEQGN RKPENLAPQF TKICHICHKG  60
FESGKALGGH MRMHVQESKG LIKSSSKSPK PVVVKNSATE FSTSTTDSSG EPVCIECGKI  120
FPSKKSLYGH MRSHPDRPYR GIEPPQSTKN SSTSTLSDAL PQNNHKAAED QQIDSAGTAR  180
IWFGPNPKVV PDLVKIVPSW SQTAKRGTKG TSLSETNSET DDDCDDDDDD ELDLSEAVHD  240
LMMLAQANPK GAEEATNSNF MTKNEDRDGK DRTVIDYVGV AKKRKQKLEI EEDGDFVSGF  300
DLRKSRNHLE LGVDLKEDSE EELSDSENSE SIVLANMMRR KKRRKMKLED LEGAVVAQDH  360
QHQSHHHKVY PCSLCNKSFQ SHQALGGHMS SHNKFKNNIQ YPVEHDHHKQ SGSDDTNNGN  420
ANLTNAATQV DHDQAESHQC RFCNRTFPTG QALGGHMRSH WTGPNDPAQS SQTRRKGLDI  480
DLNELPPMEY EQGIDYSGDG YATSSYNSVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	338	345	MRRKKRRK
2	339	345	RRKKRRK
3	341	345	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	6e-16	C2H2 family protein