PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001051.1_g000029.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HSF
Protein Properties Length: 332aa    MW: 36815.3 Da    PI: 8.5999
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001051.1_g000029.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.5e-35101012102
                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                                Fl+k++++++d++ +++isw+ ng++fvv+++ +fa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++
  Rmu_sc0001051.1_g000029.1  10 FLMKTFQLVDDPASDDVISWNGNGTAFVVWKTVDFARDMLPNYFKHNNFSSFVRQLNTYGFRKTVPDK---------WEFANDN 84 
                                9***************************************************************9999.........******* PP

                                XXXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  86 Fkkgkkellekikrkks 102
                                F++g+kell++i+r+ks
  Rmu_sc0001051.1_g000029.1  85 FRRGEKELLSEIRRRKS 101
                                ***************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    
MAQRSVPAPF LMKTFQLVDD PASDDVISWN GNGTAFVVWK TVDFARDMLP NYFKHNNFSS  60
FVRQLNTYGF RKTVPDKWEF ANDNFRRGEK ELLSEIRRRK SVSSSQAQAN AAEKSGGDAP  120
STPSNSGEDL ASTSTSSPDS KNPGSVETAA AVCQAVDLSG ENEKLKKDNE TLSSELAQTK  180
KQCDELVAFL MEYMKVGPDQ INQIMRQGSL GSSCDVDDHG RGHTENDNDE KVVAGGEEGL  240
KLFGVWLKGN ESEEKKKRRE KKSGGGGPQA KKMKMAEFHA PLRKSGKAWP LASFSTTNIA  300
RQLRKPHLQI KCRYSALKEF MHAFDNPPIL EI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255259KKKRR
2255262KKKRREKK
3256261KKRREK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.19e-83HSF family protein