PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0001036.1_g000040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | TCP | ||||||||
Protein Properties | Length: 246aa MW: 27942.5 Da PI: 10.0548 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 75 | 2.2e-23 | 190 | 239 | 1 | 50 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieW 50 a+g+kd+hsk++T +g+RdR++Rl++++a++f+d+qd+LG+d++sk ++W Rmu_sc0001036.1_g000040.1 190 ATGRKDSHSKVCTTKGPRDRSIRLVSHTAIQFYDMQDRLGYDQPSKVVDW 239 589*********************************************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence |
MCLLRDCSVY KSPENEFSEP LKRPFHRGLP FDSLVCQDDK LQGCVDRTLD SRAFRGWIET 60 DNPWTNDDET DNALVAVGGV AIGICDGIFQ LQNACDDKTL PSLISLRRRR HWSFATAISL 120 SATAQEIGRR LHRTLRVYPR RRRQRLDHNN LHHRTTTSSS AASQLGLGIR TASSSTASEI 180 VEAQGHILRA TGRKDSHSKV CTTKGPRDRS IRLVSHTAIQ FYDMQDRLGY DQPSKVVDWP 240 RRTRRT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 3e-28 | TCP family protein |