PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0001035.1_g000078.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 164aa MW: 19046.1 Da PI: 4.5783 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.1 | 2.9e-22 | 8 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.d.iykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrkn 75 lp+G+rF Ptd+el+++yL+ +++ + +++++++ + + ePw + k ++e+ +yfF++r++ ++t kr Rmu_sc0001035.1_g000078.1 8 LPVGVRFLPTDQELLDYYLRSRIAMGDQFRTDFVADCpHfFGDKEPWVVWQiyggaesKKVEDENTLYFFTNRRRLSPTAKRFD 91 79********************9988855558899996424577***99644666654222355678***************** PP NAM 76 ratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 r++ sg+W+a+ +ev + +g + glk+ + + g ++++ W+m+e++l Rmu_sc0001035.1_g000078.1 92 RKVGSGTWSAQYA-REVED-DGVVLGLKREFRYE-GGCDESHNDGWLMQEFQL 141 *********9976.99999.99**********97.66666689********98 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 164 aa Download sequence |
MAILSNKLPV GVRFLPTDQE LLDYYLRSRI AMGDQFRTDF VADCPHFFGD KEPWVVWQIY 60 GGAESKKVED ENTLYFFTNR RRLSPTAKRF DRKVGSGTWS AQYAREVEDD GVVLGLKREF 120 RYEGGCDESH NDGWLMQEFQ LDDDSDLEYH FFDNLVTGAR STTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62380.1 | 1e-16 | NAC family protein |