PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001029.1_g000029.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 394aa    MW: 44966.2 Da    PI: 8.9292
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001029.1_g000029.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.43.3e-153999357
                               --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               +R+t+t++ql++L+el++    +y + e+++e+  +l    ++++++V++WFqN +a+e++
  Rmu_sc0001029.1_g000029.1 39 NRWTPTPNQLRILQELYYDkvLKYATPEQIQEICLHLqqygQIEDENVFFWFQNLKARERQ 99
                               7****************96679*************************************97 PP
2Wus_type_Homeobox87.61.3e-2837100264
          Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                +++RWtPtp+Q++iL+ely+ + l+  + e+iq+i  +L++yG+ied+NVf+WFQN kaRerqk
  Rmu_sc0001029.1_g000029.1  37 TNNRWTPTPNQLRILQELYYdKVLKYATPEQIQEICLHLQQYGQIEDENVFFWFQNLKARERQK 100
                                579***************99677788999**********************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    
MEPRTLQLMK LQTQQQIEDG GNNQAAGSSA NTPIRPTNNR WTPTPNQLRI LQELYYDKVL  60
KYATPEQIQE ICLHLQQYGQ IEDENVFFWF QNLKARERQK LREFRNVRVG GPLDLNFGST  120
SSTDDGRAAV NGCHRRLQRS EAKLMDVVSR PENCGGSNHL RDTLSIYNLE PVRDGEEALK  180
AKLGNKKHIR KLTLDWKLSR PSNNVDNEDV VLEGLRPYCN LEIWKIQGFH GAQLRRFLLE  240
KYEFGAYKAE LLCWVVAEMI AEKPSWIRHE RLQIFSIDVQ PGGLRVATGG GDRKVRIWNM  300
KSLGRDFSNE ESAQRLLATL RDHCGSVNCV RWAKHGTTEF GSGEPPDVEN WKVAMTLRGH  360
TADVVMIFLA LFGISMFSKA TPRRAQCALR CEAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.16e-21WOX family protein