PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_sc0001010.1_g000066.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | GRAS | ||||||||
Protein Properties | Length: 109aa MW: 13027.1 Da PI: 9.2128 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 82.6 | 6.9e-26 | 1 | 104 | 270 | 373 |
GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353 +l+++lpre++ r E+e++gre+vn+vaceg++r+ r et+++W+ r ++aGF+++pl+ ++++++k +++ + + v+e Rmu_sc0001010.1_g000066.1 1 MLDTNLPREDQMRLGFEKEFIGREVVNIVACEGFQRIVRPETYKQWQIRNMRAGFRQLPLDREVMNKIKDKVKMGYHPSFVVDE 84 589*************************************************************************999***** PP GRAS 354 esgslvlgWkdrpLvsvSaW 373 + ++++ Wk+r L++ +W Rmu_sc0001010.1_g000066.1 85 DGHWMLHEWKGRILYASACW 104 ******************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence |
MLDTNLPRED QMRLGFEKEF IGREVVNIVA CEGFQRIVRP ETYKQWQIRN MRAGFRQLPL 60 DREVMNKIKD KVKMGYHPSF VVDEDGHWML HEWKGRILYA SACWAPSRT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 7e-46 | GRAS family protein |