PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0001010.1_g000030.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 670aa    MW: 76871.7 Da    PI: 6.5139
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0001010.1_g000030.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS371.79.5e-1142996682374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++ L +cA+av+s ++  a++lL+++++++sp+g ++qRla+yf++ L+arl++ ++  ++ l +++ts    +e l a++++ 
  Rmu_sc0001010.1_g000030.1 299 TTMLNQCAQAVASYEQGTASELLKKIRQHSSPHGHATQRLAHYFANSLEARLTGVGTPSFSPLFSRQTS---AAEYLLAYQVYT 379
                                5789**************************************************999999888888888...9*********** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                                  +P+  +s+l aN++I++ +++e+r+H+iDf+is+G+QWp L+q L++R++gpp+l iTg++ p+ g   +e++eetg+rLa+
  Rmu_sc0001010.1_g000030.1 380 TSCPFKMMSQLFANRTIMKLAKNETRLHVIDFGISYGFQWPFLIQHLSERANGPPKLHITGIELPQRGfrPRERVEETGRRLAR 463
                                ******************************************************************99**************** PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                ++++++vpfe++v +a+ +e+++ e+L+++++E ++Vn+  +l++++de+v  +s+rd+vLkl+k+++P+v+++   +  hn++
  Rmu_sc0001010.1_g000030.1 464 YCAKFNVPFEYDV-IAQGWETIQCEDLKIDRNELVVVNCLNRLKHIHDETVMENSPRDAVLKLIKNINPNVFIHGIINGTHNTP 546
                                ************9.7********************************************************************* PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                                 F++rf eal +y alfd++ea++pre+e r+ +Ere  gr+i+n+vaceg er+er et++kW+ r  +aG+k++pl++++ k
  Rmu_sc0001010.1_g000030.1 547 FFATRFKEALLHYYALFDMFEATVPREDERRMIIEREKCGRDIMNIVACEGVERFERPETYKKWQIRNARAGLKQLPLDQEELK 630
                                ************************************************************************************ PP

                       GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                ++k l + +++d +rvee+ +++++gWk+r L ++S W+
  Rmu_sc0001010.1_g000030.1 631 KVKNLYKSYHND-FRVEEDGQWILQGWKGRILRALSLWT 668
                                **********77.*************************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    
MDTLFDRFSG PIEGFYFGQA PTSITFNPNL ENKCKVTQES TNTLIHPANL DHPSDLSTPL  60
SPASEEETVD VSYSNNPVIK YISDILLDEV LEDESCMLQD YLAVQAAEKS FYDVLNPNDP  120
HSPNKASLGE SFSDTLLVSD SLFERQSLGN FGNVGEAKKF LPNWEFDIIE KERYELLPVA  180
RSNLVKGSLA SDKKNDVNNP TDGMKGKKNH HREDGDYPEE GRSSKQSVVS ADDSEPQEMF  240
DKVLLCQAEH HHRKWESCTP HCSMKREETE QLQQNRQPKG SKTNRSKRQN KDEEGVDLTT  300
MLNQCAQAVA SYEQGTASEL LKKIRQHSSP HGHATQRLAH YFANSLEARL TGVGTPSFSP  360
LFSRQTSAAE YLLAYQVYTT SCPFKMMSQL FANRTIMKLA KNETRLHVID FGISYGFQWP  420
FLIQHLSERA NGPPKLHITG IELPQRGFRP RERVEETGRR LARYCAKFNV PFEYDVIAQG  480
WETIQCEDLK IDRNELVVVN CLNRLKHIHD ETVMENSPRD AVLKLIKNIN PNVFIHGIIN  540
GTHNTPFFAT RFKEALLHYY ALFDMFEATV PREDERRMII EREKCGRDIM NIVACEGVER  600
FERPETYKKW QIRNARAGLK QLPLDQEELK KVKNLYKSYH NDFRVEEDGQ WILQGWKGRI  660
LRALSLWTPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-178GRAS family protein