PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_sc0000986.1_g000032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | SBP | ||||||||
Protein Properties | Length: 188aa MW: 20597.6 Da PI: 9.2605 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 98.1 | 7.5e-31 | 73 | 141 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cq+++C adl +ak yhrrhkvCe+hska+ v+vsg +qr fhel efDe+krsCrrrLa+hnerrrk++ Rmu_sc0000986.1_g000032.1 73 CQADRCGADLGDAKIYHRRHKVCEFHSKAAIVVVSGARQR-------FHELAEFDEAKRSCRRRLAGHNERRRKSS 141 **************************************97.......7**************************87 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 188 aa Download sequence |
MDRQTWKEKM LNKNADEVED DSDEDETCGH GSGLISIRFE ENEKHKVKAA GSTGKKSGSS 60 SGGGGGASSA PSCQADRCGA DLGDAKIYHR RHKVCEFHSK AAIVVVSGAR QRFHELAEFD 120 EAKRSCRRRL AGHNERRRKS SGEPYGEGSS RRGISHQYRS ESTQATTKYH MTSPAPGNTA 180 NSKHFQIS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G53160.1 | 4e-41 | SBP family protein |