PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000979.1_g000009.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

TCP

Protein Properties

Length: 377aa MW: 41536.2 Da PI: 7.8432

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000979.1_g000009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	134.1	1.2e-41	117	245	2	134
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssaseceaessss 80 a+kkdrhski T++g+RdRRvRls+++a++fFdLqd LGfdk+skt++WLl ++ +aik+l ++ +s+s+s++++ +++ Rmu_sc0000979.1_g000009.1 117 AVKKDRHSKIFTSQGLRDRRVRLSINVAREFFDLQDLLGFDKASKTLDWLLSNSTKAIKDLEKSkcnnsTSISSSSTSDCDDVL 200 78************************************************************54333111111112222332 PP TCP 81 sasnsssgkaaksaa.kskksqksaasalnlakesrakarararertrekmrikn 134 ++ ++a ++++ k+aa +a+ srakarararertrekm+ ++ Rmu_sc0000979.1_g000009.1 201 DTN--------NEASdDKRRKMKEAA--AIMARASRAKARARARERTREKMCSTS 245 222........222213444444444..77888*****************885 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MCSSTNNNIS SSGTVFPFPP YNFPFSSSSS SHNSHHPLLP QENTTCGGIF GLHHDQFSLL 60 NNCLLSPGPE STMVNLGGAS SNAIVPSSGG YQQHYGYGNN ITHPYFVSKE VRVPVVAVKK 120 DRHSKIFTSQ GLRDRRVRLS INVAREFFDL QDLLGFDKAS KTLDWLLSNS TKAIKDLEKS 180 KCNNSTSISS SSTSDCDDVL DTNNEASDDK RRKMKEAAAI MARASRAKAR ARARERTREK 240 MCSTSTRSPQ ICSQLSLFNE LEHADMNKEP GSTLLSNCQA EYHESVELKR KLKAPSVSNY 300 HDRSLELNPK STEPSSNCCS HINIQFPNAI SQNYWDISGS VFTCPSICAI TTNMNLNSTA 360 DDQGGDIHDN TYKAVPC

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MCSSTNNNIS SSGTVFPFPP YNFPFSSSSS SHNSHHPLLP QENTTCGGIF GLHHDQFSLL  60
NNCLLSPGPE STMVNLGGAS SNAIVPSSGG YQQHYGYGNN ITHPYFVSKE VRVPVVAVKK  120
DRHSKIFTSQ GLRDRRVRLS INVAREFFDL QDLLGFDKAS KTLDWLLSNS TKAIKDLEKS  180
KCNNSTSISS SSTSDCDDVL DTNNEASDDK RRKMKEAAAI MARASRAKAR ARARERTREK  240
MCSTSTRSPQ ICSQLSLFNE LEHADMNKEP GSTLLSNCQA EYHESVELKR KLKAPSVSNY  300
HDRSLELNPK STEPSSNCCS HINIQFPNAI SQNYWDISGS VFTCPSICAI TTNMNLNSTA  360
DDQGGDIHDN TYKAVPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	2e-28	TCP family protein