PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000962.1_g000038.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 294aa    MW: 32045.5 Da    PI: 9.0464
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000962.1_g000038.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.65.2e-14112170355
                                --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHH CS
                   Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRake 55 
                                +R+ +t+ ql++L+el++    ++p+ e+++ +  +l    +++ ++V++WFqN +a+e
  Rmu_sc0000962.1_g000038.1 112 HRWGPTPAQLRILQELYYDkgLKNPNPEQIQGICLHLkpygQIENKNVFYWFQNLKARE 170
                                7****************96579***********************************97 PP
2Wus_type_Homeobox93.61.7e-30110173264
          Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                +++RW Ptp Q++iL+ely+ +Gl++Pn e+iq i  +L+ yG+ie+kNVfyWFQN kaRe qk
  Rmu_sc0000962.1_g000038.1 110 TSHRWGPTPAQLRILQELYYdKGLKNPNPEQIQGICLHLKPYGQIENKNVFYWFQNLKARESQK 173
                                689***************9889***************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MVSEEGDEAA GGGPASFGGR RAENQAGASV LCFRPARGKR KREMRRVSKM GNRNSAHQAS  60
THSYSDGLDP RQAQVRPTRV TAYPFRDLWQ SNLLSAKAVC HSASRFPRPT SHRWGPTPAQ  120
LRILQELYYD KGLKNPNPEQ IQGICLHLKP YGQIENKNVF YWFQNLKARE SQKLKEIRNV  180
RVGGSLDLNF GSTSSTEGGR SIDLNFGSTD STGDDGSIDL TLGLRSLMER RGGDHQEVET  240
LPLFPEHGEN ILGNPKATSE EGSAFGYYSG GSGGYNSGSP VSLELSLNPS GAAD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13644ARGKRKREM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-20WOX family protein