PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000871.1_g000019.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 306aa    MW: 33201.2 Da    PI: 9.7296
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000871.1_g000019.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.91.1e-181661147
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               +g+W++eEde l ++v+ +G+++W++I++ ++ gR++k+c++rw + 
  Rmu_sc0000871.1_g000019.1 16 KGPWSPEEDEALQRLVQSYGPRNWSLISKSIP-GRSGKSCRLRWCNQ 61
                               79******************************.***********985 PP
2Myb_DNA-binding54.82.2e-1770112347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                ++T+eEd+ +++a++++G++ W+tI+r ++ gRt++ +k++w++ 
  Rmu_sc0000871.1_g000019.1  70 PFTPEEDDTIIRAHARFGNK-WATISRLLN-GRTDNAIKNHWNST 112
                                89******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MASSSSTKKA AADRIKGPWS PEEDEALQRL VQSYGPRNWS LISKSIPGRS GKSCRLRWCN  60
QLSPEVEHRP FTPEEDDTII RAHARFGNKW ATISRLLNGR TDNAIKNHWN STLKRKFSSF  120
SDDMSPEQPL KRSASVGAGT AVSGLYMNPG SPSGSDLSDS SLPGVIPPSQ AFRPVAPVAD  180
PPTSLSLSLP GSNEGPNHQR SASGSGSSWV VSPKPKAQIV QLQPQVIQAQ PEDAGGGEAA  240
RQGNHNSEAG IDKQFFSAEF LDVMQEMIRK EVRNYMSGVD HNGMFMHTEA AIRNAVVKRI  300
GISKVE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.12e-74MYB family protein