PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000766.1_g000017.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 312aa MW: 36706.2 Da PI: 6.0822

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000766.1_g000017.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.8	3.9e-25	61	142	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 +W+ qe+++Li++r +++++ ++k++k+lWe ++ +m+++g +rs++qCk+kw+nl +ryk +++ e + ++++p+f++ Rmu_sc0000766.1_g000017.1 61 QWSVQETKELITIRAGLDQTFMETKRNKQLWEVIATQMKDKGHNRSAEQCKCKWKNLVTRYKGCETAEAET---MRQQFPFFND 141 7******************************************************************84...55679**9 PP trihelix 85 l 85 l Rmu_sc0000766.1_g000017.1 142 L 142 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence
MEGHYPHHLH QQQQQELHQF QLQHQFQVVQ QPQQLLPPPP QQHLSPPPIT VHVDASDRFP 60 QWSVQETKEL ITIRAGLDQT FMETKRNKQL WEVIATQMKD KGHNRSAEQC KCKWKNLVTR 120 YKGCETAEAE TMRQQFPFFN DLATIMAARE QRMVWTEADS IGGASASKKK AAAVTLSSDE 180 EDEDNEDSEE AGEKGITAAR KKKKVMKTGN IGSSTGMGLG GNNVKEILED FMRQQLQLDM 240 QWREEFQARE NERRMREYEW RQTMEALENE RLMLEREWRE REEQRRMREE ARAEKRDAIL 300 TALLDRLNRE DM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	4e-55	Trihelix family protein